BAC Information

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BAC

Clone NameMSMg01-070E07
Chromosome8 (Build37)
Map Location 19,284,785 - 19,285,301
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040466, Mcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5
Downstream geneDefb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070E07.T7 (MSMg01no070_e07.b1)MSMg01-070E07.TJ (MSMg01no070_e07.g1)
ACCAG294330AG294331
length662680
length of high quality
(start - end)
533 (34 - 566)517 (76 - 592)
definitionCHROMAT_FILE: MSMg01no070_e07.b1 PHD_FILE: MSMg01no070_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:16 2005CHROMAT_FILE: MSMg01no070_e07.g1 PHD_FILE: MSMg01no070_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:16 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTGTT
TCCCTAATTTCTTTCTCAGCCTGTTTATTCTTTGTGTAGAGAAAGGCCAT
TTACTTGTTTGAGTTAATTTCATATCCTGCTACTTCACAGAAGCTGTTTA
TCAGTTTTAGGAGTTCTCTGGTGGAATTTTTAGGGTCATTTATATATACT
GTCATATCATCTGTAAAAAGTGATGTTTTTACTTCCTCTTTTCCAATTTG
TATCCCCTTGATCTCCTTTTGTTGTCGAATTGCTCTGGCTAGGACTTCAA
GAACAATGTTGAATAGGTATGGAGAGAGTGGACAGCCTTGTCTAGTCCCT
GATTTTAGTGGGATTGCTTCCAGCTTCTCACCATTTACTTTGATGTTGGC
TACTGGCCTGCTCTAGATTGCTTTTATCATGTTTAGGTATGGGCCTTAAA
TTCCTGATCTTTCCAAGACTTTTATCATGAATAGGTGTTGGATCTAGTCG
AATGCTTTTTCCGCATCTAAGGAGATGATCATGTGGTTTTTCTCTTTGTG
TTTGTTTATATAATGGATTACGTTGTTGGATTTCCATATATTAAACCATC
CCTGCATCCCTGGAATAAAACCTACTTGTCCAGGATGGATGATTGCTTTA
ATGGGTTCTTGG
NACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTATCTTGGATATCTCTTCA
AAGCTGCATTAAGCTTTCCAATGCTGTAAAGTACTTCATTGTGGTGTATC
TGGCAGAGCACACTGGAGTCATGGGACATGTGCAATTTCAGTATATGAAG
AAGTTTTCTGCATAGAAAAAATATTTTTCTCAGCATTTTGTTTGATGTGG
GCCTCTGGTTTGCTGTATATTGATTTTACTATGATTAAGTATGGGCCTTG
AATTCCTGATCTTTCCAAGACTTTTAAAATGAAGGGATGGTGAATTTTGT
CAAGTGCTTTCTCAGCATCTAATGAGATGATCTTTGCTTTGTTTGTTTTT
CTTTGAATTTGCATATATACCGGATTCCGATGATGGATTTCCATGTATTG
AACAATCCCCGCATCCCTGTGATGAAGCCTACTTGATGATGATGTGACTT
GACATCTTTTGGATTTGGTTAGCAAGATTTTATTGAGCAGTTTTGCATTG
ATATTTATAAGGGATATTGAACTGAAGTTCTGCTTTTTTTGTTGTGTCAC
TGTGTGTTTTTGGTATCAGCATAACTGTGGCATGTGTTTCTATTTTGTGG
AGTATTTTGAAAGTATTAGCATTAGGTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_e07.g1 MSMg01no070_e07.g1 CHROMAT_FILE:
MSMg01no070_e07.g1 PHD_FILE: MSMg01no070_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:16 2005
         (517 letters)



>mm_chr8_19284585_19285501
          Length = 917

 Score =  503 bits (260), Expect = e-146
 Identities = 457/530 (86%), Gaps = 26/530 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatttatcttggatatctcttcaaagctgcattaagctttccaatgctgtaaagtact 60
           |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 201 tttatttatcttggatatctcttccaagctgcattaagctttccaatgctataaagtact 260

                                                                       
Query: 61  tcattgtggtgt---atctggcagagcacactggagtcatgggacatgtgcaatttcagt 117
           ||| ||||||||    |||   ||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tcactgtggtgtgccttct---agagcacactggagtcatgagacatgtgcaatttcagt 317

                                                                       
Query: 118 atatgaagaagttttctgcatagaaaaaatatttttctcagcattttgtttgatgtgggc 177
           ||||||||||| ||| || |||||||| |||||||||||| ||||||||||||||| |||
Sbjct: 318 atatgaagaagatttatgtatagaaaatatatttttctcaacattttgtttgatgttggc 377

                                                                       
Query: 178 ctctggtttgctgtatattgattttactatgattaagtatgggccttgaattcctgatct 237
           ||||||||||||| |||||||||||||| || ||| ||||| |||||||| |||||||||
Sbjct: 378 ctctggtttgctgcatattgattttactctgtttaggtatgagccttgaaatcctgatct 437

                                                                       
Query: 238 ttccaagacttttaaaatgaagggatggtgaattttgtcaagtgctttctcagcatctaa 297
           |||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| ||||
Sbjct: 438 ttccaagactgttaaaatgaatggatggttaattttgtcaaatgctttctcagcacctaa 497

                                                                       
Query: 298 tgagatgatctt-tgctttgtttgtttt-tctttgaatttgcatatataccggattccga 355
           |||||||||| | ||    |||| |||| ||||||| ||||  ||||||  |||||  ||
Sbjct: 498 tgagatgatcatgtg----gttt-ttttctctttgagtttgtttatatagtggattatga 552

                                                                       
Query: 356 tgatggatttccatgtattgaacaatcccc-gcatccctgtga-tgaagcctacttgatg 413
           |||||||||||||| |||||||| | || | |||| |||| || |||| |||||||||| 
Sbjct: 553 tgatggatttccatatattgaacca-cctctgcatacctg-gaatgaaacctacttgatc 610

                                                                       
Query: 414 atgatg--tgacttgacat---cttttggatttggttagcaaga-ttttattgagcagtt 467
           ||||||  ||| || ||||   |||  |||||  ||| |||||| |||||||||| | ||
Sbjct: 611 atgatggatgatttcacatgtcctt--ggattcagtttgcaagaattttattgagtattt 668

                                                             
Query: 468 ttgcattgatatttataagggatattgaactgaagttctgctttttttgt 517
           |||||||||||||||||| ||| ||||| || ||||||| ||||||||||
Sbjct: 669 ttgcattgatatttataaaggaaattgatctaaagttct-ctttttttgt 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)