BAC Information

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BAC

Clone NameMSMg01-070J20
Chromosome8 (Build37)
Map Location 23,618,162 - 23,724,180
singlet/doubletdoublet
Overlap geneSlc20a2, LOC100040803, Vdac3
Upstream geneDefcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15, LOC547006, Mrps31, AI316807
Downstream geneDkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070J20.T7 (MSMg01no070_j20.b1)MSMg01-070J20.TJ (MSMg01no070_j20.g1)
ACCAG294593AG294594
length705700
length of high quality
(start - end)
421 (39 - 459)460 (67 - 526)
definitionCHROMAT_FILE: MSMg01no070_j20.b1 PHD_FILE: MSMg01no070_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:45 2005CHROMAT_FILE: MSMg01no070_j20.g1 PHD_FILE: MSMg01no070_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,618,162 - 23,618,579)(23,723,721 - 23,724,180)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
GGCTATTCCTAGAGAGAAACATTTTTTTGAAGCTTAGCTTTCTGAGCAGG
AGAGAAATCTGTAAGCATAACAGAGAAGTCACTCATGTCACCCTGAGCAG
AAGGGATTCTCTTCCAGCAGATGCTGCGGGATAAACAGGTCCTCGCAGGC
ATGGCACAGCCCTGTCCTTACCCGAGGCCCCCGGGAGGTGTTTGTAATGG
CGTACTATAGTTGTGCTGGTTTTCAAGCTAAAATTAATTTGACCATTGTA
GTTTTTAATCCTGCCTGCCCCGAAGAAAAGCTGATTAGAATTTATCCATT
TTTAATGTAACAGAAAGAGGTTTATCGATGAGTGGGAAGCGTGTGTTAAG
ATGCTCATCGACACTTGCAGAGTGTGCGCTAGCGGTTTCTGTGCGGCAAA
AAGGATGTAGGAGAGTGGGAGAGGAGTTCTTCAGCGTGGACTTCCTGGCC
CTCATTGTGGTCAGTTCTGTGACTCTCTGCAGATCTCCTCTGTGCCCCAT
GACACAAGGGACACTTGTCAGAGGCCCCTCATGAGTGGAAGCTCTGTTGG
TTCGCTGTGCCTTAAATAGGAAACGGTCTCTAGGGGTTTCAGCTACGTGG
TCACAGATTTCGAGGTCCCATGCTATGAAACTCAGGTATCTCTTTACAGC
CGGAA
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGGTGTGCTCCACCACACCCAGCCTGCTCCCTA
GAACTTGATGGTGCTCCTGTTAAGGAGAAGGCAGTAGTTTGGGGAAAGAG
TTAAGGTGAAATTACCGGTTCTAAGACAAGCTTTGCCAGAAGATGGGTTC
ACATGCATGAGAGCTGTGATTGGCGTAACCATCAGGCTGTTACCCATACT
GTATCAGATAATAGTTTTTTCAAACTGAGCCTGACCCTAGGCTACTTTGT
TTTACAAGCAGCTTCTGACTCTGTTTTGAAGGAACAGGATGACGACAGCT
CTTGAGTAGACTCATAAACGACACTACCTATCAAACACCCACAAAGTCTG
TTCACCGTAGATTAGTAAATGACTTATTCCTGGGAGCAGAGAGGGAGGGA
GCCACCATATAAATCTATTGGAGTGTGATGGTTTGTATATGCTCAGCCCA
GGGAGTGGCACTATTAGAGGGTGTGGCCCTGTTGGAGTGCGTGTGTCACT
GTGGGCCTGGGCTTTAAGACCTCTAACCTAGCTGCCTAGAAGTCAGTCTT
CCACTATCATGCTTTCGAGGAAGATGTAAAACTCTCAGTTCCTCCTGCAT
CATGCCTGCCCTGATGCTGTCATGCTCCTGCCCTGATGACTCCTGACGGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_j20.b1 MSMg01no070_j20.b1 CHROMAT_FILE:
MSMg01no070_j20.b1 PHD_FILE: MSMg01no070_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:45 2005
         (421 letters)



>mm_chr8_23617959_23618779
          Length = 821

 Score =  754 bits (390), Expect = 0.0
 Identities = 411/418 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctcggctattcctagagagaaacatttttttgaagcttagctttctgagcagga 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctcggctatttttagagagaaacatttttttgaagcttagctttctgagcagga 263

                                                                       
Query: 64  gagaaatctgtaagcataacagagaagtcactcatgtcaccctgagcagaagggattctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagaaatctgtaagcataacagagaagtcactcatgtcaccctgagcagaagggattctc 323

                                                                       
Query: 124 ttccagcagatgctgcgggataaacaggtcctcgcaggcatggcacagccctgtccttac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttccagcagatgctgcgggataaacaggtcctcgcaggcatggcacagccctgtccttac 383

                                                                       
Query: 184 ccgaggcccccgggaggtgtttgtaatggcgtactatagttgtgctggttttcaagctaa 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 384 ccgaggcccccgggaggtgtttgtaatggcgtactatagttgtgctggtttttaagctaa 443

                                                                       
Query: 244 aattaatttgaccattgtagtttttaatcctgcctgccccgaagaaaagctgattagaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattaatttgaccattgtagtttttaatcctgcctgccccgaagaaaagctgattagaat 503

                                                                       
Query: 304 ttatccatttttaatgtaacagaaagaggtttatcgatgagtgggaagcgtgtgttaaga 363
           ||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct: 504 ttatccatttttaatgtaacaaaaagaagtttatcgatgagtgggaagcatgtgttaaga 563

                                                                     
Query: 364 tgctcatcgacacttgcagagtgtgcgctagcggtttctgtgcggcaaaaaggatgta 421
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 tgctcatcgacacttgcagagtgtgcgctagtggtttctgtgcggcaaaaaggatgta 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no070_j20.g1 MSMg01no070_j20.g1 CHROMAT_FILE:
MSMg01no070_j20.g1 PHD_FILE: MSMg01no070_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:45 2005
         (460 letters)



>mm_chr8_23723574_23724433
          Length = 860

 Score =  835 bits (432), Expect = 0.0
 Identities = 453/460 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggtgtgctccaccacacccagcctgctccctagaacttgatggtgctcctgttaagga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 607 aaggtgtgctccaccacacccagcctgctccctagaacttgatggtgctcctgttaagaa 548

                                                                       
Query: 61  gaaggcagtagtttggggaaagagttaaggtgaaattaccggttctaagacaagctttgc 120
           ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct: 547 gaaggcagtagtttggggaaagagttaagatgaaattaccggttctaacacaagctttcc 488

                                                                       
Query: 121 cagaagatgggttcacatgcatgagagctgtgattggcgtaaccatcaggctgttaccca 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cagaagatggattcacatgcatgagagctgtgattggcgtaaccatcaggctgttaccca 428

                                                                       
Query: 181 tactgtatcagataatagttttttcaaactgagcctgaccctaggctactttgttttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tactgtatcagataatagttttttcaaactgagcctgaccctaggctactttgttttaca 368

                                                                       
Query: 241 agcagcttctgactctgttttgaaggaacaggatgacgacagctcttgagtagactcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agcagcttctgactctgttttgaaggaacaggatgacgacagctcttgagtagactcata 308

                                                                       
Query: 301 aacgacactacctatcaaacacccacaaagtctgttcaccgtagattagtaaatgactta 360
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 307 aacgacactacctatcaaacacccacaaagtctgttcaccgtaggttggtaaatgactta 248

                                                                       
Query: 361 ttcctgggagcagagagggagggagccaccatataaatctattggagtgtgatggtttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ttcctgggagcagagagggagggagccaccatataaatctattggagtgtgatggtttgt 188

                                                   
Query: 421 atatgctcagcccagggagtggcactattagagggtgtgg 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 atatgctcagcccagggagtggcactattagagggtgtgg 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)