BAC Information

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BAC

Clone NameMSMg01-071C03
Chromosome8 (Build37)
Map Location 16,945,247 - 16,945,521
singlet/doubletsinglet
Overlap geneCsmd1
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071C03.T7 (MSMg01no071_c03.b1)MSMg01-071C03.TJ (MSMg01no071_c03.g1)
ACCAG294990AG294991
length760750
length of high quality
(start - end)
278 (41 - 318)---
definitionCHROMAT_FILE: MSMg01no071_c03.b1 PHD_FILE: MSMg01no071_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:26 2005CHROMAT_FILE: MSMg01no071_c03.g1 PHD_FILE: MSMg01no071_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTTCCTCTTCCTTTAAAAGGGAATCATAAGAGGTAATTGGCTCATTTCC
TGTTCCTCTCTTCATTGTTCCTTTGAAACTGCTTACCAGGCAGGGTTGCA
GGGCTCCAGATCTTAGGATTGGCATGTGAGGGAGTAGAAGAACTCTCTTT
TCGTGAGAGCATCATCTGTTTCTAACAAGCCTTTGCCTTGTTTTTTTGTG
TAGGGCAGTAGAACTGTAATCTGACCTAAGACGGGGAATCTTCCTGCTAT
CTCTCAGCTTGGTATGCCAGCTACTTGGATGACAGCTTTCTGACACTTCC
TGGGTCTTATTTCCTGAGGCTTATGATTCTGGAGTCCCTTACCTATCTGA
TTACGTTTTGACTCTGATTTCTTCTCTGATTCCCCTCTTCTTTTTACTTG
GTTTACTGTCTCCTTTTTTATTTTTTGCTTTCTAGACTGTTGTCTTTTTG
TTGGTTAGTTTTCTTATTATCTTTTGCATGTTATTATTGTTCCTTTCTTC
CCCCACTCTGTATATCCTTGTTTTCGTATTCTGTCGAGCTTCCCTTCTTG
CATGTGTGTTTTTTTCCTCCTCTTTTTCTATGTTTTTATTGATTCTTTTT
GCTCTCCCTTTTTTTTTGATCTTTTATTTTCGTTTTTCCATCCTTTTTCC
TTGTTTCTTGCTTAATTTTCTTTGGTGGAAGGTTTTAACTTGGCTATGTT
TGCTTCTTTC
CCCCCCCCCCCGNCCCCCCGNCNNNNGTGTNNCCGGTGGCGGGGGGGNNG
CGCCCGCCCGCCCCCCCCGGGCGGGTGTGCGGGTGTGGCCTCTCTCGGGG
GTTATGCTCGTTTTTTGGTGGTTTTGTTATTGTTAGCGTGATTAAGAAAG
AGATTATCGGACTCTCCTGGCGCATTCCTTTACATATCTCTGCCTCTTGG
CGCGGCCTGTTGGGGGGATCCCCCCGCCCCGCGCCGTCCGGGCTCTCGGG
GCCGCCCGGCGCCGCCCCAGCCGCCGCCGCCACAGCGGCGGCGCGGCGCG
CCCGGGTGCGCGCGGCATGCACCCTACGCCTGCCGGGGGGGGGGGGAGGC
GGGCCGACGCCGACCCGCGCGCACCCTTACTTCACCACCCTCCCCCTTCC
ACGATAAATGAACCGCTTCTCCTTTATAATATCGGCCTAGGACTAGAGGG
GGTAGGGCCCTTGGGCGGGGCCCGGCCCCTGAGGCCCGGTCCCTGGCACC
TTTTAGGGGGGGGGACGCCCTTATTAGAGAAAAAGGGGATTCCCGGGCGG
GCCCCAAAATTACCTCTCCCAAGAAAAACGGGGGAGGATACCCCCCTTTT
CACCCCCACCCCCCCAATTTTTAAAAATGCCCCCTGGGGGTCCTAGAATA
CAAAAACACACGGGGAAATACCGGGGGGTCCCCCAAAACACCCGCATTAA
TCCGGAGAAAAAGGGATCTTGCTCTATACCCCGATCGTGTTTTCTTCCAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_c03.b1 MSMg01no071_c03.b1 CHROMAT_FILE:
MSMg01no071_c03.b1 PHD_FILE: MSMg01no071_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:26 2005
         (278 letters)



>mm_chr8_16945043_16945721
          Length = 679

 Score =  456 bits (236), Expect = e-133
 Identities = 266/276 (96%), Gaps = 3/276 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttcctcttcctttaaaaggga-a-tcataagaggtaattggctcatttcctg 62
           ||||| ||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 479 gaattaatttcctctccctttaaaa-ggatagtcataagaggtaattggctcatttcctg 421

                                                                       
Query: 63  ttcctctcttcattgttcctttgaaactgcttaccaggcagggttgcagggctccagatc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttcctctcttcattgttcctttgaaactgcttaccaggcagggttgcagggctccagatc 361

                                                                       
Query: 123 ttaggattggcatgtgagggagtagaagaactctcttttcgtgagagcatcatctgtttc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttaggattggcatgtgagggagtagaagaactctcttttcgtgagagcatcatctgtttc 301

                                                                       
Query: 183 taacaagcctttgccttgtttttttgtgtagggcagtagaactgtaatctgacctaagac 242
           ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| 
Sbjct: 300 taacaagcctttgacttgtttttttgtgtagggcagtagaactgcaatctgaccaaagat 241

                                               
Query: 243 ggggaatcttcctgctatctctcagcttggtatgcc 278
           |||||||||||||||||| |||||||||||||||||
Sbjct: 240 ggggaatcttcctgctatttctcagcttggtatgcc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 679
Length adjustment: 9
Effective length of query: 269
Effective length of database: 670
Effective search space:   180230
Effective search space used:   180230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)