BAC Information

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BAC

Clone NameMSMg01-071F13
Chromosome8 (Build37)
Map Location 75,345,980 - 75,519,698
singlet/doubletdoublet
Overlap geneLarge
Upstream geneLOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3
Downstream geneLOC100039001, LOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071F13.T7 (MSMg01no071_f13.b1)MSMg01-071F13.TJ (MSMg01no071_f13.g1)
ACCAG295152AG295153
length693689
length of high quality
(start - end)
239 (78 - 316)487 (75 - 561)
definitionCHROMAT_FILE: MSMg01no071_f13.b1 PHD_FILE: MSMg01no071_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:43 2005CHROMAT_FILE: MSMg01no071_f13.g1 PHD_FILE: MSMg01no071_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,345,980 - 75,346,217)(75,519,212 - 75,519,698)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAACCGGGGCGGAA
NTCACTTTATTTTCCTAAAAAAATTATGTTCATCCCAATGCTTGGTTCAT
ACAAAGCATGCAATTTATGGCCAGTAGAAAGCTTTGGGTTGGGGAGAGGA
ATTATTCTAGGTTCCTTTTTCAGAGTCCTAAACGGAAGATGGAGGCTGAA
GATTGAGTCCTTGCTCCACCAGACACTCTCAACTCCCCATAAAATATATT
GATGCATGAACTTGATGCCATGGAATGAATATCATTACCCATAAACAGTT
TAAAAATACCTTTCATAGGTTTTTTAGTATCTGTACAACCCAGCTGTTAT
GCTTAAAATACTTGTGCCCCCTTTAGGCTTGTACAAAATTGCATTCTTTT
TACTCAGAGGAAGGAGGCGTCACTATTACATTGTATGAAATAGAGGAATA
TGAACTGTGAGCAGAAACAGGCAGATGCAATGGTTCTGTACATATTGTTT
CATCTCAAAGAGATTAGCAGGATTCCTACTTCCCTAGTCCTGACTCATAC
AGCCAATGTTAGAGTCTAGAGCTTACTAATACTGTGCAGATGAGTACTGG
TACATTTTGGACAGCTCAGCTCCCTGAATACCCTTGGAGGCTTTGTTATT
TGTTTATGAGAAATACAATAGTTTTTTGGTTGCAGCTATCACG
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCATCTCTCAGACTGTGCCTCCAAAG
AGCTCTAGCTCAAAAGAACTATCCTGTATTCAATCTCCAGTCTCCTTCTG
TCTTCCCCTCTTTGTTCTAGCTTCTGCCACTCACCATACTATGTGAATCC
TGCTCCCCAGGATCTTCCTTCAGTTGCTTGAAACACCTCTTAATAGGCCT
TTTCTTCTATGAAAACCAGCCCAGTCTCAGCAGGGCCTAGAGGTTTAGAG
ATGGCATAGAAGCTATACAGTAGAATAATGGAGCCTATTCTGACCTTCTC
ATCTTTCCTGTGATGATGACAGTATTAATTGTTTCAGGCAGATGCCTTCC
TGCCTGTGCAAACCCGACTGTCCAGAGTTCAGTTTAGCTCAGCTTCCTGT
CCTGATGGCCCACAGGGAGGATACACTGCTCCAACAGAGCCTTTATTCCA
GAGCTTGGACAGAAAAGATAGGGATGTCGTGGGCAGGCTGCTTAAGTTAT
GTACTTATTCATTCCCAGTGAGGTTGACAGATGCGGGCTCTTAAGAGTGT
GTTTGCCTGCACGTGCAAACCAGCATGTTGAGGCCAGAGGTTAATGCCTG
TTGTCTGTCTCAGTTGCTCTCCATCAATGTATAACTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_f13.b1 MSMg01no071_f13.b1 CHROMAT_FILE:
MSMg01no071_f13.b1 PHD_FILE: MSMg01no071_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:43 2005
         (239 letters)



>mm_chr8_75345780_75346418
          Length = 639

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttcatcccaatgcttggttcatacaaagcatgcaatttatggccagtagaaagctttgg 60
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 201 gttcatcccaatgcttggttcatacaaagcatgcaatttatgggaagtagaaagctttgg 260

                                                                       
Query: 61  gttggggagaggaattattctaggttcctttttcagagtcctaaacggaagatggaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttggggagaggaattattctaggttcctttttcagagtcctaaacggaagatggaggct 320

                                                                       
Query: 121 gaagattgagtccttgctccaccagacactctcaactccccataaaatatattgatgcat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 321 gaagattgagtccttgctccaccagacactctcaactccccataaaatataaagatgcat 380

                                                                     
Query: 181 gaacttgatgccatggaatgaatatcattacccataaacagtttaaaaatacctttca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaacttgatgccatggaatgaatatcattacccataaacagtttaaaaatacctttca 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no071_f13.g1 MSMg01no071_f13.g1 CHROMAT_FILE:
MSMg01no071_f13.g1 PHD_FILE: MSMg01no071_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:43 2005
         (487 letters)



>mm_chr8_75519012_75519898
          Length = 887

 Score =  934 bits (483), Expect = 0.0
 Identities = 486/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatctctcagactgtgcctccaaagagctctagctcaaaagaactatcctgtattcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tcatctctcagactgtgcctccaaagagctctagctcaaaagaactatcctgtattcaat 628

                                                                       
Query: 61  ctccagtctccttctgtcttcccctctttgttctagcttctgccactcaccatactatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctccagtctccttctgtcttcccctctttgttctagcttctgccactcaccatactatgt 568

                                                                       
Query: 121 gaatcctgctccccaggatcttccttcagttgcttgaaacacctcttaataggccttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gaatcctgctccccaggatcttccttcagttgcttgaaacacctcttaataggccttttc 508

                                                                       
Query: 181 ttctatgaaaaccagcccagtctcagcagggcctagaggtttagagatggcatagaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttctatgaaaaccagcccagtctcagcagggcctagaggtttagagatggcatagaagct 448

                                                                       
Query: 241 atacagtagaataatggagcctattctgaccttctcatctttcctgtgatgatgacagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atacagtagaataatggagcctattctgaccttctcatctttcctgtgatgatgacagta 388

                                                                       
Query: 301 ttaattgtttcaggcagatgccttcctgcctgtgcaaacccgactgtccagagttcagtt 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 387 ttaattgtttcaggcagatgccttcctgcctgtgcaaacctgactgtccagagttcagtt 328

                                                                       
Query: 361 tagctcagcttcctgtcctgatggcccacagggaggatacactgctccaacagagccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tagctcagcttcctgtcctgatggcccacagggaggatacactgctccaacagagccttt 268

                                                                       
Query: 421 attccagagcttggacagaaaagatagggatgtcgtgggcaggctgcttaagttatgtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attccagagcttggacagaaaagatagggatgtcgtgggcaggctgcttaagttatgtac 208

                  
Query: 481 ttattca 487
           |||||||
Sbjct: 207 ttattca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)