BAC Information

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BAC

Clone NameMSMg01-071M05
Chromosome8 (Build37)
Map Location 79,786,998 - 79,787,144
singlet/doubletsinglet
Overlap geneArhgap10
Upstream geneEG631594, LOC666226, LOC100039211, LOC384847, Nr3c2
Downstream geneLOC100039235, AI931714, Tmem34, Ednra, EG622803, Ttc29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071M05.T7 (MSMg01no071_m05.b1)MSMg01-071M05.TJ (MSMg01no071_m05.g1)
ACCAG295469AG295470
length733839
length of high quality
(start - end)
147 (49 - 195)---
definitionCHROMAT_FILE: MSMg01no071_m05.b1 PHD_FILE: MSMg01no071_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:16 2005CHROMAT_FILE: MSMg01no071_m05.g1 PHD_FILE: MSMg01no071_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATAATTGCGGCGCTTTACGACTCACTATAGGTACAGAACCGCGGAATC
TCCTGGGAGATTCTCTTTTCTCCACTATTTTGGAGGGAAAGTAGGTAGGG
CATTTGAAAGAATTAAGTATTAAAATTGTAAGGCATATTACAATAAGTAA
TTAACTAAAATCTGGGTGGTTACATAATGATTACAATATCTGTGGTTTTA
GTAGGTTGGTTCTTTAAAAAGCTAGCCGATGAATGTGAATTGTTCCATGG
GCCGTGCCTGTAGTCCTGTTTGTGATCTTTGTGTCGCGGCGTGCCTCTAT
TTGCCTGTTCTTTGTCTTTCTTTCTTCTCTCTGCTTGTTTTGCTCTTGTT
CTTTTTTTCTTTATTGTTTATTTCCTCTTTTCTTTTTTCTTTTTCTCCCA
AACAAACCATCTCTTTTTAGAAAACTAGTCTCTATCTTTTCTTTTTACTT
CTCTTTTCTATCCTTACTTTTCTATTCATACTTACCTCGCATCTTTTTTC
ATTTTATCTATCCAGCTATATTCTTTATCTTTCTATTCTGTGCATTTGCT
CATATTAATATCTTTCTCTCCCAACTTTTTCTCACTTATTTTTTGTATCT
ATTTTTTACGATTGTTGTTTTACACCTCCTACTCATATTTTTATTTTTTT
TCTCTTTTCTATCCTTTTCTTATTTTCTTTCTTCATTCATCTTCTCTACC
CCTCTTCTTTTCCACTTCTCATTTATCCTCTAT
TGACGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCCCTCGGGTCTTCCCAATGATGACCTTG
GGGCCAAAGTTGAACAAGTCAGAGAGGACATCTTCTGTTTCCAGGGTTCT
CCAGACTCTTCCATCAGTCACACAGAAGCTTCCTGGTTAGACACTGTTCG
CCTTTATGAAGCTCTAGTAAGTGCTCTCTAACCAATATGTCTATGGAAGA
AAACAAATTAAAATTGTATATGCTGGATGAAAGAATAGGAAAGCGCTAGA
GATAGATTAATGCTCTTCTTCCTGCCCCAAGTAAGTTATTATATAGCCCC
CCTATGTCTGTCACTCCCTCTAACTGCTCCTCTCCCACAAACCTCTNGCG
ACAACGTTCCCATCTTGTGTATCGCAAATTAAACTCCTATCGCCAAATAG
TTACTCTGTATATTTATAATAATTATAACTATGTATATTTATCCTAAAGA
CAATAAAATCGTATAAAAGTAAAAAAATAATTACTTTAATTATCATTCTA
CTTAATTTATTATTCCTTTAACTACTATGTTTATCTCTAAATACATCCAT
TACTTCTTCTCGCTAAATTACTATTTATACATCATTCTTCCTCCCACACT
CCTCTCCTCTCTCTATAATTATATCTTTACCACACTATATATAAAACTAC
TATCTACATCTAAATGTCTATCCCTATCATCCATCTCGACATCCTTATAT
ATATTATATACGCAACCTACCCCATATTCTAATACTATATGAAACCACGA
CCCATAATAAATATCAAATACCAAGAATATCCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_m05.b1 MSMg01no071_m05.b1 CHROMAT_FILE:
MSMg01no071_m05.b1 PHD_FILE: MSMg01no071_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:16 2005
         (147 letters)



>mm_chr8_79786798_79787344
          Length = 547

 Score =  277 bits (143), Expect = 3e-79
 Identities = 146/147 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcctgggagattctcttttctccactattttggagggaaagtaggtagggcatttgaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tctcctgggagattttcttttctccactattttggagggaaagtaggtagggcatttgaa 288

                                                                       
Query: 61  agaattaagtattaaaattgtaaggcatattacaataagtaattaactaaaatctgggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agaattaagtattaaaattgtaaggcatattacaataagtaattaactaaaatctgggtg 228

                                      
Query: 121 gttacataatgattacaatatctgtgg 147
           |||||||||||||||||||||||||||
Sbjct: 227 gttacataatgattacaatatctgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)