BAC Information

Click to search

BAC

Clone NameMSMg01-071N17
Chromosome8 (Build37)
Map Location 98,438,156 - 98,438,512
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2
Downstream geneLOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071N17.T7 (MSMg01no071_n17.b1)MSMg01-071N17.TJ (MSMg01no071_n17.g1)
ACCAG295540AG295541
length712787
length of high quality
(start - end)
359 (42 - 400)98 (81 - 178)
definitionCHROMAT_FILE: MSMg01no071_n17.b1 PHD_FILE: MSMg01no071_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:24 2005CHROMAT_FILE: MSMg01no071_n17.g1 PHD_FILE: MSMg01no071_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCATAAATCGGCGGAATTCT
GCTCTTTTACCCACATTAGTCTGGTCACGACCTTCTATAACCCCAGCCCT
AGGGAACCTGATGCCTTTCTCTGGCCTCCATAGACATCTTGCACTCATAC
CCACATAATTAAAAATAAATCTTAAAGAAGTATTACGATTAACAGGATTT
CTAAGTGAATGGGGATAGGAATGAGTACAGTTTTAGTAGGTGAAGAGGGC
TAGCTCCATTAGGAGCCACTCTCAGCGCCAAATGCCACTCCTATCCGCAG
GAGGTTGGTCTTAGGGATTCTTTTTTTTTTTTTTAATTTTATTTTTTTTA
TTAGGTATTTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATAC
CCCCTCCCCCATTCCCCTACCCAACCACTCCCACTTCTTGGCCCTGGTGT
TCCCCTGTACTGAGTCAGATAAAGTTTGTACGATCAATGGGTTCTCTCTT
TTCTGCGATGTTCGACTAGGCTATCTTCTGATACATATGCTTCTAGAGAC
TTTTTTTCTTTCGGCGTATTGTTTATTTTATTTTGCTGTTACTACTTGCG
CGTCGCATACTCCCTTTACCTCCTTGGTTACTTTCTCTAGTTCTCTCCAT
TGGGAGTTCTTGTTGTCCATCTTATACCTGTATGGGAGCCTTTTCTTTCC
GTGTTTTGTATG
ATGCTTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCCAATTCTCAGAACTGTTGTTTATGGATTTGGC
TATTCAGAAGGAATTGATCAAAATTGTGTGTGGTTGCATAAGTGTGTGTG
TCTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGATATAGATATAGTCTCCC
CCTTCCTCCCCCCCTTCTCTCCCTTCCTTTTCTTTTTTTTTCCCCCCCCC
TCCCCCTTCCCCCTCCTCTCTTTCTCTTTTTTTTCTTTTCTCCCCCTTCC
CTCTTTTCCCCCCTCCTTCCCTCTTTTCTTCCCCCCCTCTTTCCTTTTTC
TTTCCTCCCCTCCTTTTTCTCTTCTCCCTCTCTTTCTACTCCTCTTTTTC
CTCTTCCCTCTCTTCCTCTTTCTTCTCCCCCCCCTCTTTTCTCTTTTCTC
TCCCCTTTCCCCCTCCCTCCCTTTTCCTCTCTTCCCTCCTCTCTCTTTCT
TACTTCTTCCCTCTCCTTTCTCCTTCTCCTCTCCTCCTCTCCCCTTCTTT
TCTTCTCTCTCCTTTATCCCTCCTCCCTACTTTCTTCCCTCTCCCCTTTT
TTCTCCCCCTCATTTCTATATTTTCTCCCCCTCTTCCTTCTTCTCTCTTC
CTCCCCCTTCTTCTTTCTCTCTTCCTTTTTCTTTATCCTCTCCCCCCCAC
CTTCTCTTTCTCTTCTCTTTTCCCTTTCTTTTTCTTCTCCTCTCCCTCCC
CCTCTCCTCTTCTTTTCTCTTCTCCCCCCTTCCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_n17.b1 MSMg01no071_n17.b1 CHROMAT_FILE:
MSMg01no071_n17.b1 PHD_FILE: MSMg01no071_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:24 2005
         (359 letters)



>mm_chr8_98437956_98438714
          Length = 759

 Score =  588 bits (304), Expect = e-172
 Identities = 345/364 (94%), Gaps = 13/364 (3%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattctgctct---tttacccacattagtctggtcacgaccttctataaccccagccc 58
           |||||||||||||   | |  |||| ||||||||||| | | ||||||||||||||||||
Sbjct: 201 ggaattctgctctcagtat--ccacgttagtctggtcgcaatcttctataaccccagccc 258

                                                                       
Query: 59  tagggaacctgatgcctttctctggcctccatagacatcttgcactcatacccacataat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tagggaacctgatgcctttctctggcctccatagacatcttgcactcatacccacataat 318

                                                                       
Query: 119 taaaaataaatcttaaagaagtattacgattaacaggatttctaagtgaatggggatagg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 taaaaataaatcttaaagaagtattacgattaacaggatttctaagtgaatggggatagg 378

                                                                       
Query: 179 aatgagtacagttttagtaggtgaagagggctagctccattaggagccactctcagcgcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatgagtacagttttagtaggtgaagagggctagctccattaggagccactctcagcgcc 438

                                                                       
Query: 239 aaatgccactcctatccgcaggaggttggtcttagggattcttttttttttttttaattt 298
           |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||
Sbjct: 439 aaatgccactcctatccgcaggaggttggtcttagggattctttttttttta---aattt 495

                                                                       
Query: 299 tattttttttattaggtattttc---atttacatttccaatgctatcccaaaagtccccc 355
           ||||||||  |||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 496 tatttttt--attaggtattttcttcatttacatttccaatgctatcccaaaagtccccc 553

               
Query: 356 atac 359
           ||||
Sbjct: 554 atac 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)