BAC Information

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BAC

Clone NameMSMg01-071P16
Chromosome8 (Build37)
Map Location 64,552,186 - 64,552,366
singlet/doubletsinglet
Overlap geneAnxa10
Upstream geneNek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672
Downstream geneLOC100040775, LOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071P16.T7 (MSMg01no071_p16.b1)MSMg01-071P16.TJ (MSMg01no071_p16.g1)
ACCAG295633AG295634
length698743
length of high quality
(start - end)
531 (66 - 596)178 (71 - 248)
definitionCHROMAT_FILE: MSMg01no071_p16.b1 PHD_FILE: MSMg01no071_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:34 2005CHROMAT_FILE: MSMg01no071_p16.g1 PHD_FILE: MSMg01no071_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTATACGATCACTAATCGGTAGGAGGCGCGGAATTCAG
TTATTTACTCAAAATTCCCTTCTGATGATCCTAGGAATCAGCATCCTGTG
ACCCCAGTCCTTTGATTCTTAGGAAACAGCAAGCACACATTTTCTTTTAA
TATTGCAAAAGAATTTAGAGGTCTTCTTCCTGTCTCTGTTAAGAACAGAG
AATAAACTAGCTGGTTGGGACCCTGTCTTGAAATTAACATTTCTACCACA
CCTGGGTCTAACCTTGCTGTGTCCCAGGCTGACCTTGAATTTAGGAATCT
ATCTGCTTTGTATTTTCCTGCCTTTTATCTTTCTGACAAGCTTGCTCATT
AATGCAGCTGCCTTTGTTCCTTTAGCCCCTCATAAAATTCATATTGCATC
CTTCTATCCCCTGCATAGTTGAGTAATTATATATTTTCAAACTCGTGTGT
GTATCCAAGCTCTTTGCCTTAAGGGCTGTCTTGAAGGTCCTAGTATTTAC
TATTTTGCTGAGACATTAGCCACATCTTCCACTCCTAGATTCATGCTGTC
TCTGATTATCATGAAGTCATTAATGTTAACAGAGAGAACATTCGTTGTAG
GAATGTGAAAATATGTGCATTATATGCTCTTATCAGGGCCTTGTCTCAGG
GGCAGGAACCTGGTCATTCTGTCCCCACCAGGGCTTCTCAGGGCTCAG
TGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGTGGAATCAGTGATCTGAGTTTAAAGAA
TAAAAGTACAAAACCCCACGGGTTCAGAGGACATTTTAAAGGTCATGGAC
TTTATTTTTATAAAGTGTGTGTTACAGTGTGTACGTTTTAATAAGTATGC
TATGATATGTGAGTTCTGGAGAGGGGTGTGTATGTGTGTGTTATGGNTTA
NCCCCCCACCNCCCCTCCTTCTCTTTTCTCTAAATATTTTCCCACTCTCC
CACCCCCTTTTCTTCTTTTTTCTCTCCCCATTTTCTCCTTTCTTCTTTTT
CTTATTTCCTCCTCCCTCCTTTTTCCTCCCCCCCCCTTTTCTCTCTCTTT
CTGCCTTTTTCCCCCCCTTTCTTATTTCCCCTTTTTCTCTTCCCTTCCTT
CCCTTTTTTTTTTTTTTCCCTCTCTTTTTCCCTTCTCCTCCCCCCCTTCT
TTTTTCCCCTCTCCCCCTTAACCTTTTTCTCCTTTACCTATTCAGTTATT
CACTCCCTCTACCCTACCCCTCCCTTTTTTCCTCTTTATCCTTCCTCCCT
CCCCCCTATATCTCCCCCCCTTTTCTCCCCACACTTCTCCCTCTATCGTT
TCTTTTTTACCTCCCTCTCCCACTCCCCCCCCCCCTTTTTCTCCATTATG
ATCCTTTTCCTTTTTACCATCTTCCTATAAACTTCCATCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_p16.g1 MSMg01no071_p16.g1 CHROMAT_FILE:
MSMg01no071_p16.g1 PHD_FILE: MSMg01no071_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:34 2005
         (178 letters)



>mm_chr8_64551986_64552568
          Length = 583

 Score =  288 bits (149), Expect = 1e-82
 Identities = 171/181 (94%), Gaps = 5/181 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtggaatcagtgatctgagtttaaagaataaaagtacaaaaccccacgggttcagagg 60
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 381 aagtggaatcagtgatctgagtttaaagaataaaagtacaaaaccctacaggttcagagg 322

                                                                       
Query: 61  acattttaaaggtcatgga-----ctttatttttataaagtgtgtgttacagtgtgtacg 115
           |||||||||||| ||||||     ||||||||||||||||||||||||||||||||||| 
Sbjct: 321 acattttaaaggccatggacttttctttatttttataaagtgtgtgttacagtgtgtaca 262

                                                                       
Query: 116 ttttaataagtatgctatgatatgtgagttctggagaggggtgtgtatgtgtgtgttatg 175
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ttttaataagtatgctatgatatgtgagttctggagaggggtgtgtatgtgtgtgtaatg 202

            
Query: 176 g 176
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 583
Length adjustment: 8
Effective length of query: 170
Effective length of database: 575
Effective search space:    97750
Effective search space used:    97750
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)