BAC Information

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BAC

Clone NameMSMg01-072A02
Chromosome8 (Build37)
Map Location 102,755,354 - 102,755,779
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531, LOC100042069, LOC436054, LOC100042078
Downstream geneLOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072A02.T7 (MSMg01no072_a02.b1)MSMg01-072A02.TJ (MSMg01no072_a02.g1)
ACCAG295653AG295654
length688693
length of high quality
(start - end)
429 (47 - 475)424 (77 - 500)
definitionCHROMAT_FILE: MSMg01no072_a02.b1 PHD_FILE: MSMg01no072_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:36 2005CHROMAT_FILE: MSMg01no072_a02.g1 PHD_FILE: MSMg01no072_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGA
ATTCACTGCTTGCCCTCATACTGACAATATGTTCTAATTTTCTGTTTTCT
TCTCATTCTCTGGCTCTTTCTGTCTTCACCTGTGTCTAGCTTGTTCTCCC
TCCAAACTGTATTTATAAAACTGGTCAAACAAAACTGACGTCCACACCTA
CCATGCCTCCCTTTTCACTCTCATTTCTCTTAAGTCGCCTCTCTTCCCTA
GGTTGTCCTCATGTGAGTTGTATTTTACCTGAGCTCCTCAACTTTGTATC
AAGATCTTAAAACCACTAAGTGACATTGTTCTATAGTCAAGTGCATCTCA
TATGAAACCATACTCTTTAAAATGCCTTAGGTCTATCTTTTCTATACAAC
AACATCCTATCTCATCACAACCTTGTACCACACATCAGCACATTAGCAGG
CATATGCTATATGACTACTGATAAAGCTGGTGATGGTGATCTCATATTCC
TGGGGTGCCACTCCTTCTATGGCTCAAGATTATTGCATTCTCTGTTCTAC
CATACTGTCCTCACGGCCTTTCTGGTTTTCTCTGACCCAACTGCCTTCTT
TCACAGGAAATTTCTCTTTCCTCTGCTGGAAAATCCTGCTCATTTGCTCA
ATCACATAATCTGAACATTTTAATCTCCTTTTTCCAAT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGCACACTCAAAAAGAAGAA
ATGTGTCCATAGCCAAAATGAAAGGAAGTCACAGTACATTCAGGGATGTC
TTTATTTTGTCAATATGAAAATGTTCTAAATTATTGCAACAACCTCAATC
ACTTTATGATACATTCCTTGTCCATTTGTTTACATTTTCAGTATACATTC
ATCAGAATAGTTTTCTGACGTCACTGCCCTAAACAATCATATACATGGAT
TTTGGAAAAAAAATCTTATGATCTCAATTTATTCTATGATGTGTGCACAC
CCTTTTAACTTGTGTCTCTTATCATAATGCACAAATGACAAAATGAAAAC
AATTCCTGCATATAATTTTGGAAGAAATAAAATTCATCTTCTGAAGGATT
AAATACAAAACTGGCCATACAGTACTCACGTAATTCTATATTTAATAGTA
ATTACGCACACGATGAGCATTGAGGCCTTACTATTTTTGAACTGCATGCT
AATTCATTAACATGCACATGTTTGACTTTTACAAACCAAACATAAGATGA
TAACTTTAACAAATATTAAAATTTTATGTATTTGGACAGTCATGAAACCA
AATTTACACCCATTGTGAATGATCTAACGAACATTTATGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_a02.g1 MSMg01no072_a02.g1 CHROMAT_FILE:
MSMg01no072_a02.g1 PHD_FILE: MSMg01no072_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:36 2005
         (424 letters)



>mm_chr8_102755154_102755979
          Length = 826

 Score =  712 bits (368), Expect = 0.0
 Identities = 411/426 (96%), Gaps = 2/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcagcacactcaaaaagaagaaatgtgtccatagccaaaatgaaaggaagtcacagta 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 626 tttcagcacactcaaaaagaagaaatgtgtccacagccaaaatgaaaggaagtcagagta 567

                                                                       
Query: 61  cattcagggatgtctttattttgtcaatatgaaaatgttctaaattattgcaacaacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cattcagggatgtctttattttgtcaatatgaaaatgttctaaattattgcaacaacctc 507

                                                                       
Query: 121 aatcactttatgatacattccttgtccatttgtttacattttcagtatacattcatcaga 180
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 506 aatcactttatgatacattccttgtccatttgtttacactgtcagtatacattcatcaga 447

                                                                       
Query: 181 atagttttctgacgtcactgccctaaacaatcatatacatggattttggaaaaaaaa--t 238
           |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||  |
Sbjct: 446 atagttttctgacgtcactgccctaaacaatcatatgcatgaattttggaaaaaaaaaat 387

                                                                       
Query: 239 cttatgatctcaatttattctatgatgtgtgcacacccttttaacttgtgtctcttatca 298
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 386 cttgtgatctcaatttattctatgatgtgtgcacacccttttaacttgtgtctcttagca 327

                                                                       
Query: 299 taatgcacaaatgacaaaatgaaaacaattcctgcatataattttggaagaaataaaatt 358
           ||||||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||
Sbjct: 326 taatgcacaaatgacaaaatgaaaaaaatttctgcataaaatttttgaagaaataaaatt 267

                                                                       
Query: 359 catcttctgaaggattaaatacaaaactggccatacagtactcacgtaattctatattta 418
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 266 catcttctgaaggattaaatacaaaactggccatacagtactcacttaattctatattta 207

                 
Query: 419 atagta 424
           ||||||
Sbjct: 206 atagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 826
Length adjustment: 9
Effective length of query: 415
Effective length of database: 817
Effective search space:   339055
Effective search space used:   339055
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)