BAC Information

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BAC

Clone NameMSMg01-072A24
Chromosome8 (Build37)
Map Location 118,484,882 - 118,485,231
singlet/doubletsinglet
Overlap genenone
Upstream geneWwox, Maf
Downstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072A24.T7 (MSMg01no072_a24.b1)MSMg01-072A24.TJ (MSMg01no072_a24.g1)
ACCAG295697AG295698
length705658
length of high quality
(start - end)
352 (41 - 392)---
definitionCHROMAT_FILE: MSMg01no072_a24.b1 PHD_FILE: MSMg01no072_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:40 2005CHROMAT_FILE: MSMg01no072_a24.g1 PHD_FILE: MSMg01no072_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTCC
CCTGCTTAGAATCAGCCCTTACTATCTTGGCCTTGCTTGCATTAAGGAAG
AAGTTCTGTGGAAGATCTGGTCTCTGATTGGATTCCAGCTGAGAGTACCC
ATGCTGAAATTAGCGTGATGCCACTGACCTTCAGATAACTGGGCTCTCAG
TGGCCCTTTGCCTTGCCAGTCTCTTAAGGGTCCTTTGGAAGCAAATCTGA
CAAACCCTTTCCATGCTTTTTCTACTTGGGGACCGTCCATGGCATGTTTT
CTAGGGCATTCCTGACTTTTAAACATTTTATTTGGTCTTTTATACATAAA
CATATTGATATTCTAGCTCAAGGATGAAGAGCTTGTCCACAATAAAAGTC
CCAAGGAAATCTTACTCCTTTCACCTGGTCTTTCCATTCTGTTGATTGCC
TGGAAGGAATCAGATTTCAGTCCCTGAAGAGATGGGAACGAGGATCTCTT
GGTTTCCTGTCACCTGTTTAGTTGATTTAAAAATTAGTTATTGAGTTCGA
GCTTATGAGATGGCTCAGTGAGTAAAGAATTTGTCATACAAGCATGAAGA
CCCAAGTTTAGATCAGCAGGACCCAAGTAAAACTGAAAGTGCTAGCAAAT
CAATGTGGAATCCCAGCATTCATCAGGAAGATGGGAGGTGGCGGAAGGGG
AATAC
CGAGGGGAGGCCGGGGCGGCGGCTTCAAACGGGGGNNNNNGNCGNTTCCA
GACACGTTGGNNNNGNNNNNNNNNNNNNNGNNNNGNGGTTGGGCCGCCCC
CCCTTGNGGGGNGGGGGGGGNNNGGGGGGGGGGGGGGGGGGGGGGGGTGT
TGCCCCCCCCCCCAAGAAAAGAGGGGGGGGGGGCCCGGGGGGGGGGGCGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTTTTGTTGGGCCCCCCCC
CGANGGGAGAAAAAAATAAAAAGGGGGGGGGGGGNGNGNNNNGGGGGGTT
TGTGGGTTCCCCCCCCCCCCCGCGGGAGGGGGGAGGGGGGGGGGGGGGGG
GNNGGGGTCGAAAAATTTATTGAAAAAAGGGGGGGGGGGGGGGCCCCGCC
CCCCCGGCGGGGGGCGCGCGGGGGGGGGGCGGGGGGGGCGGGGGGGGGGC
GGGGGGCCGGGGGGGGCGGGGGGGGGGCGGGGCCGCCCGCCGCGCGGGGG
GGGGGGCCGGGGGGGCCGGGGGGGGGGGGCGCGCGGGGGGGGGGCGGCGG
GGCGCGGCGGCCGCCCGGCGGCTGCGGGCGGGGGCGGGGCCGTGCGGGGG
GGGGTGGGGGGGCGNCGGGCGGGGCGGGGGCGGGGCGCGCCGGGCGGGCG
GGCGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_a24.b1 MSMg01no072_a24.b1 CHROMAT_FILE:
MSMg01no072_a24.b1 PHD_FILE: MSMg01no072_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:40 2005
         (352 letters)



>mm_chr8_118484680_118485432
          Length = 753

 Score =  654 bits (338), Expect = 0.0
 Identities = 347/350 (99%), Gaps = 1/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattcccctgcttagaatca-gcccttactatcttggccttgcttgcattaaggaaga 61
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcccctgcttagaatcaagcccttactatcttggccttgcttgcattaaggaaga 262

                                                                       
Query: 62  agttctgtggaagatctggtctctgattggattccagctgagagtacccatgctgaaatt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agttctgtggaagatctggtctctgattggattccagctgagagtacccatgctgaaatt 322

                                                                       
Query: 122 agcgtgatgccactgaccttcagataactgggctctcagtggccctttgccttgccagtc 181
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcgtggtgccactaaccttcagataactgggctctcagtggccctttgccttgccagtc 382

                                                                       
Query: 182 tcttaagggtcctttggaagcaaatctgacaaaccctttccatgctttttctacttgggg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tcttaagggtcctttggaagcaaatctgacaaaccctttccatgctttttctacttgggg 442

                                                                       
Query: 242 accgtccatggcatgttttctagggcattcctgacttttaaacattttatttggtctttt 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 accgtccatggcatgttttctagggcattcctgacttttaaacattttatttggtctttt 502

                                                             
Query: 302 atacataaacatattgatattctagctcaaggatgaagagcttgtccaca 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atacataaacatattgatattctagctcaaggatgaagagcttgtccaca 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 753
Length adjustment: 9
Effective length of query: 343
Effective length of database: 744
Effective search space:   255192
Effective search space used:   255192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)