Query= MSMg01no072_f06.b1 MSMg01no072_f06.b1 CHROMAT_FILE:
MSMg01no072_f06.b1 PHD_FILE: MSMg01no072_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:01 2005
(370 letters)
>mm_chr8_51874617_51875385
Length = 769
Score = 574 bits (297), Expect = e-168
Identities = 350/371 (94%), Gaps = 9/371 (2%)
Strand = Plus / Minus
Query: 4 gaattctatgtatttcgccccagtttctgatttttt--aaaaaaagg-taataagcctgg 60
||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||
Sbjct: 569 gaattctatgtattttgccccagtttctga-----taaaaaaaaaggctaataagcctgg 515
Query: 61 cttcctcaagaataaacaaggataattttactttcttggg-aaagaatctgttaattcca 119
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 514 cttcctcaagaataaacaaggataattttactttcttgggaaaaaaatctgttaattcca 455
Query: 120 gtaataatctataattttatgttgaaagtttttatttgtactctgaaagtacttttgaag 179
|||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct: 454 gtaataatctataactttatgttgaaattttttatttgtactctgaaagcactgttgaag 395
Query: 180 ataaagtgtaagatcactggtaagtggctaatgctttctacagtggtcatacatcacaaa 239
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 394 ataaagtgtaagatcactggtaagtggctaacactttctacagtggtcatacatcacaaa 335
Query: 240 gacatgattttcaaaacaaaatgcttctattctacttgagttttaaagtacatttgcatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gacatgattttcaaaacaaaatgcttctattctacttgagttttaaagtacatttgcatg 275
Query: 300 gtataaatgtagatattaacactctatgacgcaaggttaacagaaaggaaatagaagtac 359
|||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct: 274 gtataaatgtagatattaacgctctttgatgcaaggttaacagaaaggaaatagaagtat 215
Query: 360 ctcattctaca 370
|||||||||||
Sbjct: 214 ctcattctaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 769
Length adjustment: 9
Effective length of query: 361
Effective length of database: 760
Effective search space: 274360
Effective search space used: 274360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_f06.g1 MSMg01no072_f06.g1 CHROMAT_FILE:
MSMg01no072_f06.g1 PHD_FILE: MSMg01no072_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:01 2005
(576 letters)
>mm_chr8_51701743_51702718
Length = 976
Score = 1029 bits (532), Expect = 0.0
Identities = 565/576 (98%), Gaps = 2/576 (0%)
Strand = Plus / Plus
Query: 1 aaggctatgtacgggagtaaataataaaacctaaacctcactccaacttttcagagaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggctatgtacgggagtaaataataaaacctaaacctcactccaacttttcagagaata 260
Query: 61 taactatatgagggttactgtgccctcataaatataattcataccatgaataatcaatca 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taactatatgagagttactgtgccctcataaatataattcataccatgaataatcaatca 320
Query: 121 taaaaattaaaaatatgcagctttaaaagatctccctattcccacttgaaacattgatga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaattaaaaatatgcagctttaaaagatctccctattcccacttgaaacattgatga 380
Query: 181 gttgcattttactctttttgtggatattttatgtattcacatttcaaatgttatccccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgcattttactctttttgtggatattttatgtattcacatttcaaatgttatccccct 440
Query: 241 ttccagtttcctctccatagaccccctatcccaaccccctccccctgcttccatgaggat 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 ttccagtttcctctccatagaccccctatcccaacccc-tccccctgcttccatgaggat 499
Query: 301 gctcctccacccacccgtctagtccctcctcactgccctggcattcccttacattagaaa 360
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctcctccacccacccatctactccctcctcactgccctggcattcccttacattagaaa 559
Query: 361 tatgtggaagattctttaaaaatgcatatatgactttctggttagaaaatgtcaaataat 420
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatctagaagattctttaaaaatgcatatatgactttctggttagaaaatgtcaaataat 619
Query: 421 taataattaagaaatttgtagatcatagatcggggaggtcatactactgtgtgcaggaat 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 620 taataattaagaaatttgtagatcata-atcggggaggtcatactactgtgtgcatgaat 678
Query: 481 tttcgttgctttctgtagagttgaatatagcaaaatgaagacagtttactagggaaaata 540
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 679 tttctttgctttctgtagagttgaatatagcaaaatgaagacagtttactagcgaaaata 738
Query: 541 gacgttgtttttaaagatgcattgataaattctcat 576
||| ||||||||||||||||||||||||||||||||
Sbjct: 739 gacattgtttttaaagatgcattgataaattctcat 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
