Query= MSMg01no072_j02.b1 MSMg01no072_j02.b1 CHROMAT_FILE:
MSMg01no072_j02.b1 PHD_FILE: MSMg01no072_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:21 2005
(633 letters)
>mm_chr8_65759085_65760117
Length = 1033
Score = 1027 bits (531), Expect = 0.0
Identities = 537/539 (99%)
Strand = Plus / Minus
Query: 5 gaattctaatatgtcctcctaaatcctgtccatggctctagattaaagaagattaccaga 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gaattctaatatgtccttctaaatcctgtccatggctctagattaaagaagattaccaga 480
Query: 65 taccttgttgtcaaaattatgggtttggggaaattattcaagatacacgagaggtgtccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taccttgttgtcaaaattatgggtttggggaaattattcaagatacacgagaggtgtccc 420
Query: 125 tgtgacattgcaggatcatcttataaaaagacagaattggattatacccttttgtttaga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgtgacattgcaggatcatcttataaaaagacagaattggattatacccttttgtttaga 360
Query: 185 tggccaatcacatgctggatctggttgtgatatcagcaagtagggtctggatttcattca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tggccaatcacatgctggatctggttgtgatatcagcaagtagggtctggatttcattca 300
Query: 245 gttctgtccaatagtattcactccaagtagacattctatgtgttatgtagatggaaacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gttctgtccaatagtattcactccaagtagacattctatgtgttatgtagatggaaacat 240
Query: 305 ctcttgttaggagagcactgctaataaacacaattattttaactgacttttcttgcaagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctcttgttaggagagcactgctaataaacacaattattttaactgacttttcttgcaagg 180
Query: 365 tttccaggtgtttgccccttatgcagaaatctgatgtaacaaacatcttaatgcatggtt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tttccaggtgtttgccccttatgcagaaatctgatgtaacaaacatcttaatgcatggtt 120
Query: 425 ctactttggttcattaaacttaacttatgtcaacatatatgaagattaaactatttctct 484
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 119 ctactttggttcattaaacttaacttatgtcaacatatatgaagatcaaactatttctct 60
Query: 485 gatcttatccatcctcagagctctggtacattatccagacgtctgaaaaattacaattc 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gatcttatccatcctcagagctctggtacattatccagacgtctgaaaaattacaattc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_j02.g1 MSMg01no072_j02.g1 CHROMAT_FILE:
MSMg01no072_j02.g1 PHD_FILE: MSMg01no072_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:21 2005
(620 letters)
>mm_chr8_65663569_65664588
Length = 1020
Score = 959 bits (496), Expect = 0.0
Identities = 607/684 (88%), Gaps = 66/684 (9%)
Strand = Plus / Plus
Query: 1 tgcactggagaggaagtgatatgttctgttctaagatcattttgtgagtcaaataaggga 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tgcaatggagaggaagtgatatgttctgttctaagatcattttgtgagtcaaataaggga 198
Query: 61 agcaaaacccaatccgctagagttctgaattagtaggatgcttaaaatcatatgctattt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agcaaa-cccaatccgctagagttctgaattagtaggatgcttaaaatcatatgctattt 257
Query: 121 atttaagcaggaaaataaaattgatgaacacactgtcataaacgatgttttagtaaataa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 258 atttaagcaggaaaataaaattgatgaacacactgtcataaatgatgttttagtaaataa 317
Query: 181 aaatgtcaccaatttt-atttacaaaatttgagaaatatatatgtaatgttgttgggttt 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaatgtcaccaatttttatttacaaaatttgagaaatatatatgtaatgttgttgggttt 377
Query: 240 ttaaatgcaaaatatacagagcactccctgggttaactacccag-taatggcttttgaga 298
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 378 ttaaatgcaaaatatacagagcactccctgggttaactacccagcta-tggcttttgaga 436
Query: 299 aaaccaataactgttataattgagaagcgagtgagtgataatatttgattttaaaaaggc 358
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 437 aaaccagtaactgttataattgagaagcgagtgagtgacaatatttgattttaaaaaggc 496
Query: 359 aggtgtagtatattaattcataatttttgtgatttggctatatatatatat--------- 409
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aggtgtagtatattaattcataatttttgtgatttggctatatatatatatatatatata 556
Query: 410 -----------------------------------------ttccaaatgtgtgtttgtg 428
|||||||||||||||||||
Sbjct: 557 tatatatatatatatatatatatgtatatatatatatatatttccaaatgtgtgtttgtg 616
Query: 429 tgtatgtgtgtgtgtatgtgtgt------------acatgcctttaagtgtgtgtatata 476
||| ||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 617 tgtgtgtgtgtgtgtgtgtgtgtgtgtacgtgtgtacatgcctttaagtgtgtgtatata 676
Query: 477 tagagatgaagagacaaagaatgtgtgtatgtgtgtgaatatacatacagttatccactc 536
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 677 tagagataaagagacaaagaatgtgtgtatgtgtgtgtatatacatacagttatccactc 736
Query: 537 aaaaatgtgtatataccgtacatatgttttatacaaatgcagaaatatagtgaattttct 596
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 737 aaaaatgtgtatataccatacatatgttttatacaaatacagaaatacagtgaattttct 796
Query: 597 gtttgcataaaattcacaataatt 620
||||||||||||||||||||||||
Sbjct: 797 gtttgcataaaattcacaataatt 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
