BAC Information

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BAC

Clone NameMSMg01-072L15
Chromosome8 (Build37)
Map Location 72,481,855 - 72,482,330
singlet/doubletsinglet
Overlap geneGatad2a
Upstream geneLOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6
Downstream geneLOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072L15.T7 (MSMg01no072_l15.b1)MSMg01-072L15.TJ (MSMg01no072_l15.g1)
ACCAG296196AG296197
length1,540714
length of high quality
(start - end)		---502 (67 - 568)
definitionCHROMAT_FILE: MSMg01no072_l15.b1 PHD_FILE: MSMg01no072_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:33 2005CHROMAT_FILE: MSMg01no072_l15.g1 PHD_FILE: MSMg01no072_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCTCCCCTTTACCCCCCCCCCTCCCCCCCCATCCCTCTTCCTCTTCC
TCTCTCTCTCCATCTTTTTCTACTCTTTTCCTCCTCCTCCTTCTTCTCTT
CTCGCTTATGTGGCGGCTCTCACTATGATAATATCGTCATGTTACATATA
CCCTCCCAGATATAGAGAGTGCGAAATAATAAGACAAAATCTACGACATA
CACCACTACATAAATAATAATATCTCCTAACATATTATACTCATAGTCAT
GTTCTCTACTGACTCATACTGTGCCCGCTCGTCCAGATGTGCCGTTTAGC
CTGATAATTAAGAACAATGTTACCCTCAGTCAAAGACAAGCTACACCGAC
ACCTCACCTATAGTGGCACCGCGCAGGATGGATGATGAGCCGCCTCGAGT
CGTATCTAAGTTGTTCTGCACGCGATGTTTTATCGACCGGGCACACGCGG
TTACGCTAAACCTCACTATAAATACACACCATATATACCTATTAGCGTAA
GCTGAGCACCGCGTGGGCAAGAGGTAGGCGAGAGAAATATCGGCCCAGCG
AATACTTATACCGCTCATAAAATGACGCGTAAAATTAACCGCGCTGTCCC
GTACAGCAGATATATATCATTCGGCTCATTAAGATGCGAGATATTTACCG
GCACCGAGACGCGACCTGATGCGAAGATTTCCTCGCCACGTAGGTCGTCG
GTAATTCTGAAGATAGTGATATTTTGTACGCGCCACATTATGAACCGAGT
CGTAAAAGTATCTGCGTGCGATTTTATACGTGTGAGAGTAGAACAGATAC
GCGCGTGAGTGACAACAACAGGTGGGTGAAATTCGCGTGTTGGGTGTTTA
CGCGCGAAGCTCGATTCTGATGAGACTATTAGACGAGCGCAACGAGTTGC
GGGAACAGTCGGGCTGATCGGTCGAAGCAGATTAGTGTGCAAATCGGTGC
GGGTTGTACGCGATGGACGGCGTGATACAATGCAGTGGAGAAATTTAGTG
TTACGGCGCCATTTGTGTTGACGCGTGTGCGTCGATGTTTTATTAACGCG
CCGATCACCAATTCATCACAATACGACCGGTATACATCGTATGCCATAAG
ACACGCGTGCGGAGGATGCTCGGATATAACGCACTAACTAAATATCAACA
TGGACTGTCGCAACAGACTATGCTCTGCTCGCTATGAATCATATTTATTG
CTCGGTATAAAATACCTTTTCACCTATGGTTCCGGTTGTTATAATTTATT
ATATGTGAGCGCACGGCGCGCGTACACGGCATTCCGAAAAATGAACAACG
CGCGCGGCGGATAGAATATCCGTCGCGCAGCATTATCGCGTGGTGGATAT
AAACGCGGTTATATTCACCGCTGTTTTACTCGGCACTCCCCACCTTCGAA
TGGTGTTGTATTTATACAGCCTGAATTGCTGTGAGGCGAGTAGAGATACA
TATATAATGGTGTCGTGTATGAGTCATCATATATGTCTATAGAGAGTGGT
CGTGTCCGTCTCACTAACTCTACTCCTCTATTATTATGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGGTGTTTAGCTCCTGTAGGGGGAGGACCTCC
TCCAGCTTGGTGGGGTGACCCTCCTCAAGCCCTTGAAACCACCAGGAAAT
ATTGGGGAGAGTCTTAGGTCTCCAACTGCCCTGCTTGGGGGTTAACAGGT
ATTCATCATTTTTTCCATAGCTATTTGTCAATGTGTCTGGAAGTATGTTA
CATACTGATATATTCTTGCAGAGGGTAGTCAGGGAAAACTGTCTCCACAT
TTCAGGCTGAGTCCTTAGTGACCTCAACATGTGGCCCTTGAGCAGCACAC
ACCAGCAGGACATCCTGTAATTCAGCTCTCTGCCCACAACAGCTCCCTGG
AGTCTGTGTTTGCTCCCACAGGACCAAGGCTTATTATTCTCAAGGCTGCT
CCTCTTTGTTACCCAGTGTGGCTCTCCTGGGTTTCTGATGACTGTTTATC
AGTCTAGGTTCCTAGGTCCCTCCTCCAGCAGCTTTTAGAACTCAGGAAGA
CATGTTCCTCTTCAGTATGGGTGTTGAAGTGCTGAGTAGCTACAGGGCTC
ATCAGGCATCCACTCTCCAGGAACTTCCTATGTCCTGTCGTCTGGAATCT
TCCAGAGTGCTATGCCTGTTGATGTCTTTGTACCCTTATGGCATAGGCTC
CCTCGCTGTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_l15.g1 MSMg01no072_l15.g1 CHROMAT_FILE:
MSMg01no072_l15.g1 PHD_FILE: MSMg01no072_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:33 2005
         (502 letters)



>mm_chr8_72481855_72482756
          Length = 902

 Score =  920 bits (476), Expect = 0.0
 Identities = 476/476 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggtgtttagctcctgtagggggaggacctcctccagcttggtggggtgaccctcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 tttggtgtttagctcctgtagggggaggacctcctccagcttggtggggtgaccctcctc 417

                                                                       
Query: 61  aagcccttgaaaccaccaggaaatattggggagagtcttaggtctccaactgccctgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 aagcccttgaaaccaccaggaaatattggggagagtcttaggtctccaactgccctgctt 357

                                                                       
Query: 121 gggggttaacaggtattcatcattttttccatagctatttgtcaatgtgtctggaagtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gggggttaacaggtattcatcattttttccatagctatttgtcaatgtgtctggaagtat 297

                                                                       
Query: 181 gttacatactgatatattcttgcagagggtagtcagggaaaactgtctccacatttcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gttacatactgatatattcttgcagagggtagtcagggaaaactgtctccacatttcagg 237

                                                                       
Query: 241 ctgagtccttagtgacctcaacatgtggcccttgagcagcacacaccagcaggacatcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ctgagtccttagtgacctcaacatgtggcccttgagcagcacacaccagcaggacatcct 177

                                                                       
Query: 301 gtaattcagctctctgcccacaacagctccctggagtctgtgtttgctcccacaggacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 gtaattcagctctctgcccacaacagctccctggagtctgtgtttgctcccacaggacca 117

                                                                       
Query: 361 aggcttattattctcaaggctgctcctctttgttacccagtgtggctctcctgggtttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aggcttattattctcaaggctgctcctctttgttacccagtgtggctctcctgggtttct 57

                                                                   
Query: 421 gatgactgtttatcagtctaggttcctaggtccctcctccagcagcttttagaact 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  gatgactgtttatcagtctaggttcctaggtccctcctccagcagcttttagaact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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