BAC Information

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BAC

Clone NameMSMg01-073C04
Chromosome8 (Build37)
Map Location 69,403,079 - 69,403,530
singlet/doubletsinglet
Overlap geneBC053440
Upstream geneMarch1, 1810029B16Rik, Tktl2, Npy5r, Npy1r
Downstream geneLOC665453, Nat1, Nat2, LOC100041265, Nat3, Psd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073C04.T7 (MSMg01no073_c04.b1)MSMg01-073C04.TJ (MSMg01no073_c04.g1)
ACCAG296509AG296510
length718706
length of high quality
(start - end)
93 (229 - 321)452 (77 - 528)
definitionCHROMAT_FILE: MSMg01no073_c04.b1 PHD_FILE: MSMg01no073_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:06 2005CHROMAT_FILE: MSMg01no073_c04.g1 PHD_FILE: MSMg01no073_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGTGTACCTGAAAATAGGAGATGAAGTTTTCATAAGATGC
CACAAGAAGATAAAGAGATGTACTATGGTTTGGATATGTTTGATAGAGAC
CTAAGGCCCAGACAACAGCTGCAGCCTGACTATAGACTTATATTTTTTCT
GTGAGATCTAAACAGACAAGCCATATGGTAGCAGATTTCTAAACTAAATA
ACTGTGATATAAAGTATTTTTCCCTCACGCTACTAAGTATGTTGGGGGAT
TAAGAAAAAACTAATATAGAGGTAGATGAGAGACACAAAACATGTATGTA
ATCTTCCTCAACAGAATGGAAACTGGTCTGATTTTTTTGAGACAGTATGC
AGGTCAGACAACAGAAAGCTAAAGGTATGAGTCATAGGTTCAGTTCTTGA
GCTCTCCAATTTGTGTTATTTTGTATGCTCAAGCTTAACAAAAGGAATTA
TATTGCATTGTATATCTGAAGTCTAGAACATACATCACGGATCATACATA
CCCACTTATTACAATTTTACCTGATCATCGCATCCTTCGATGTACAATGA
ATAGAGGTTTTCTCCTGAACCTTACTTTGTTTTATATCTCCGCCTCCCAT
CTCTATGTTAACATAAATGCACTTGCTCTTCTTTTTTTTCCTTCCCCCTC
TTTACCGCTGATCCGCTT
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTATCATGTATTTATATTTAGAA
CTCAAAATTTAATTGTAGAAATAAATTGAAATACAAAAGAAAATTTTGGG
TTACTTTTAATTATGAGGTTCATTTCCAGTAAACATGGTATTATCTATGT
AGTATAATGCTGTTCTATGTGATTGTAACTTTTCTACAACTTGCACAGCT
TGAATTTGTTCAGGACTAATGATCAGTTAATATTTTTTGTTATTCTATTT
TTTCCTCTGGTAATTGTAGTTTTTTATATCAAAATAACTACAGCCAATCT
CCCTTCTCTATTTGGTAATAAAGATTTTGTTTACTAAAGAGGAATAATTA
CTGAGTTATGTTATGACACCTTACATCTTAGATTATATTTAACATTCTAG
CTTATCTTCTTTTTAAACCATAATTGTCTTTTGTGTATTTTTCAGTACTA
ATTGAGTCTGTGACTAACATACCTCCAGTTAATGAGGATACTGCCATTTT
CAAAAGTGATCTACAAGCAGCAGGCAAGGTTTGTTAAAACTCATACAATT
CTTGTTACTTTGTTTTCTAGTTTCTGGCGCTTGTCTGAAGAGTTTATTAA
GTACACTAGTCATCAAGTTATGATTTCTCCTCATTTCTTTGTGCGTGTTA
TAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_c04.g1 MSMg01no073_c04.g1 CHROMAT_FILE:
MSMg01no073_c04.g1 PHD_FILE: MSMg01no073_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:06 2005
         (452 letters)



>mm_chr8_69402879_69403730
          Length = 852

 Score =  835 bits (432), Expect = 0.0
 Identities = 447/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctatcatgtatttatatttagaactcaaaatttaattgtagaaataaattgaaatacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctatcatgtatttatatttagaactcaaaatttaattgtagaaataaattgaaatacaa 260

                                                                       
Query: 61  aagaaaattttgggttacttttaattatgaggttcatttccagtaaacatggtattatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaaattttgggttacttttaattatgaggttcatttccagtaaacatggtattatct 320

                                                                       
Query: 121 atgtagtataatgctgttctatgtgattgtaacttttctacaacttgcacagcttgaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtagtataatgctgttctatgtgattgtaacttttctacaacttgcacagcttgaatt 380

                                                                       
Query: 181 tgttcaggactaatgatcagttaatattttttgttattctattttttcctctggtaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttcaggactaatgatcagttaatattttttgttattctattttttcctctggtaattg 440

                                                                       
Query: 241 tagttttttatatcaaaataactacagccaatctcccttctctatttggtaataaagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagttttttatatcaaaataactacagccaatctcccttctctatttggtaataaagatt 500

                                                                       
Query: 301 ttgtttactaaagaggaataattactgagttatgttatgacaccttacatcttagattat 360
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||
Sbjct: 501 ttgtttactaaagaggaataattactgagttatgttatgccaccttaaatcttagataat 560

                                                                       
Query: 361 atttaacattctagcttatcttctttttaaaccataattgtcttttgtgtatttttcagt 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttaacattctagtttatcttctttttaaaccataattgtcttttgtgtatttttcagt 620

                                           
Query: 421 actaattgagtctgtgactaacatacctccag 452
           | ||||||||||||||||||||||||||||||
Sbjct: 621 aataattgagtctgtgactaacatacctccag 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)