Query= MSMg01no073_d23.b1 MSMg01no073_d23.b1 CHROMAT_FILE:
MSMg01no073_d23.b1 PHD_FILE: MSMg01no073_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:15 2005
(505 letters)
>mm_chr8_102210753_102211658
Length = 906
Score = 828 bits (428), Expect = 0.0
Identities = 488/508 (96%), Gaps = 5/508 (0%)
Strand = Plus / Plus
Query: 1 agactggagaa-gaaaatttcagggtgttccaaatggttttatataacctggcagtcagt 59
||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 agactggagaaggataatttcagggtgttccaaacggttttatataacctggcagtcagt 260
Query: 60 tcacctggataacattcaaaactctaggaatccaacggagaccctcctcctgtctggctc 119
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tcacctggataacattcaaaactctaggaatccagtggagaccctcctcctgtctggctc 320
Query: 120 tgctcttaggtttacactccaacattaactc-tcctcccttcactactgctattgctgct 178
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 321 tgctcttaggtttacactccaacattaactcatc-tcccttcactactgctattgctgct 379
Query: 179 agtgctgaagtttctgatttctcagtagttaggtctcccatctccagtctagttatgaac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agtgctgaagtttctgatttctcagtagttaggtctcccatctccagtctagttatgaac 439
Query: 239 cattcctatgaatattatattttctgaaatctatttcttttactttatgtatagaattat 298
|||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 cattcctatgaagagcatattttctgaaatctatttcttttattttatgtatagaattat 499
Query: 299 tttcctgcatttatgcctgtgcactatgtgcctacctggtgtcccatagaggtcagaaga 358
|||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct: 500 tttcctgcatgtatgcctgtgtattatgtgcatacctggtgtcccatagaggtcagaaga 559
Query: 359 g-agcatcagagtcctgatagtagagtcacaaactattgtgaggcactatttgccaggaa 417
| | |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 gca-catcagagtcctgaaagtagagtcacaaattattgtgaggcactatttgccaggaa 618
Query: 418 ctgagcatgtaccctgtacagaagggacaaaggttttcaacttctcagtctgatcgactg 477
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctgagcatgtaccctatacagaagggacaaaggttttcaacttctcagtctgatcgactg 678
Query: 478 tctcgtggagatattaactccctgattc 505
||||||||||||||||||||||||||||
Sbjct: 679 tctcgtggagatattaactccctgattc 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 906
Length adjustment: 10
Effective length of query: 495
Effective length of database: 896
Effective search space: 443520
Effective search space used: 443520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_d23.g1 MSMg01no073_d23.g1 CHROMAT_FILE:
MSMg01no073_d23.g1 PHD_FILE: MSMg01no073_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:15 2005
(479 letters)
>mm_chr8_102350666_102351543
Length = 878
Score = 857 bits (443), Expect = 0.0
Identities = 470/479 (98%), Gaps = 1/479 (0%)
Strand = Plus / Minus
Query: 1 tcagtcctgtatccagatgatttcaccagttgaatgttattttcctgtctttagactttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcagtcctgtatccagatgatttcaccagttgaatgttattttcctgtctttagactttg 619
Query: 61 gtgttcaaactaggcaaagatctacatgtaatttacaaatatatgatagaaaaaaaaggc 120
|||||||||||||||||||||||||||||||||||||||||| |||||| || | |||||
Sbjct: 618 gtgttcaaactaggcaaagatctacatgtaatttacaaatatctgatag-aacagaaggc 560
Query: 121 aagcactacccaggaaactgatggctttcatatgaagcaaccactaaatgtacatatatg 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 559 aagcactacccaggaaactgatggctttcatatgaagcaaccactagatgtacatatatg 500
Query: 181 gactactttcgtattgctatattattaactctttccccaagtctaaattaaactcttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gactactttcgtattgctatattattaactctttccccaagtctaaattaaactcttgtt 440
Query: 241 tggctcatctctcacatttattttaatatgtctagagatcatctgagcacaatggttata 300
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggctcatctatcagatttattttaatatgtctagagatcatctgagcacaatggttata 380
Query: 301 tataaaggcatataagtttcaggctccctttgaaggagtttgtcatctcagataaattcc 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 tataaaggcatataagtttcaggctccctttgaaggaatttgtcatctcagataaattcc 320
Query: 361 tctcacattttgagtcttgatacatgttttcagaggatcatagacggctaactaccttga 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 319 tctcacattttgagtcttgatacatgttttcagaggatcatagatggctaactaccttga 260
Query: 421 ttatttcaccagaattcatcattaatcactctgtcatgaccaagtaactaaaaaaaaaa 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttatttcaccagaattcatcattaatcactctgtcatgaccaagtaactaaaaaaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 878
Length adjustment: 10
Effective length of query: 469
Effective length of database: 868
Effective search space: 407092
Effective search space used: 407092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
