BAC Information

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BAC

Clone NameMSMg01-073L19
Chromosome8 (Build37)
Map Location 25,509,690 - 25,510,233
singlet/doubletsinglet
Overlap genenone
Upstream geneSfrp1, LOC100040931, Zmat4
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073L19.T7 (MSMg01no073_l19.b1)MSMg01-073L19.TJ (MSMg01no073_l19.g1)
ACCAG296962AG296963
length711721
length of high quality
(start - end)
---544 (72 - 615)
definitionCHROMAT_FILE: MSMg01no073_l19.b1 PHD_FILE: MSMg01no073_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:54 2005CHROMAT_FILE: MSMg01no073_l19.g1 PHD_FILE: MSMg01no073_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCGNNNGGGGGNNNNTTTTTTTCGACCGNCNGAANGANGGNGN
NTTTTCCNNCACCGCAGNNNANAANCCNACCCNCCACCGNCNNCCAAAGA
AACCANNCCTACCCCCCCNCGNCANANACNNGANAACAACCACAANNGCA
ACCCGCCCGCACCGACACAANNCCCGGCCAACGACACCNNNAACCNCGCA
CNCGGCACAAAGGCCACCCCCCCACNNCAAACGCNGAAACGGNNCATTGT
TTCGCTAACCGGCTGTACAAGATCCTAAATGTACCTGCANCTTCCACAAA
CACCAGCAATATATGTTCTTTCCAGCACNACCCNCNCCACAACGNCACCC
CTGCNACCCCCCCCCCACCCCGAGNNNCNCANCNGCCCCCNCAAAACACA
CCCCCACCCACCAACGCACGACCAGCGCAAANGACAAGNAAACCCCCCAG
CNCCCAGCCAGCCACACGNCNCACACAGCCCAGCAACGNGAAAAACACGC
CGCCCAGCACCCCGGAGACAGCCAAAACCACCCCNCNCCCNGNCAACGCC
AGAAACACACCAGCACCAAGCNCAAAAACAACCCNACCGCAAAGCNCAAA
AACCAACAAGAACCCACCCCANCCCAAACGCCACACCACCCCAACCCCCA
CCAATTTTTTTTTGTTTCCCCAACAGCCTCCTGTCTACGCGCTGCATACA
CAGACCTAAGG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTACCTGGGGAATGGAGAGTCCCGAGTC
CTACAATCAAACATAGAAGATCTATTATGAAAGATCAGTTTTAAGAGCAA
GAGGAACAACCTCTTTAGGTTTTTTTGTTCCAGAAGCATCTCAAAACAGA
AAGGTTGCAGAAGGCTAAACCTAATCTTTAGTGGTGTTGACCGTGCCTTC
TCTCGCCACAGCACACCACGGCAAAGACCCCTGAGGCAGCTGCCCTTCCC
TCTATTCCCATAACACCCAGTAAACGACAAATGAAAGCATGAAGACCTTT
CCCCATTATGACACAAGCAAAATTGGCCAGATCCCAGAGGATTGGCATCT
GTTTTGGCTTCTGAATTCTCCTTCTGCTGGAATGTAGAAATTACCCCAGG
GTGATTCAGTCCTGTCTCACCAGCCCTTGAGATGACATGGCAACAGACGT
CACAGCATGGCTCTGGAAATCACTCTTACCCCTGGCTATGTTTTGCAAGC
CCCCAACACAGCTGACAAATCTCAGAGCAGTACCTCCTCCTGCATCCTTA
GAGACACAGTCTCAGAGCTCAGTGAACTGTATAGTGGTGTTTCTCAACCT
GAGAGTCACGATCCCTTTGTGTGTTGGCGGGGTAGACGCTTAAACTATCC
TTTTGGAATGGTCGTCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_l19.g1 MSMg01no073_l19.g1 CHROMAT_FILE:
MSMg01no073_l19.g1 PHD_FILE: MSMg01no073_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:54 2005
         (544 letters)



>mm_chr8_25509490_25510433
          Length = 944

 Score =  998 bits (516), Expect = 0.0
 Identities = 537/544 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttacctggggaatggagagtcccgagtcctacaatcaaacatagaagatctattatgaa 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tttacctggggaatggagagtcccgagtcctacaatcaaacgtagaagatctattatgaa 260

                                                                       
Query: 61  agatcagttttaagagcaagaggaacaacctctttaggtttttttgttccagaagcatct 120
           ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 261 agatcagttttaagagcaagaggaacagcctctttagttttttttgttccagaagcatct 320

                                                                       
Query: 121 caaaacagaaaggttgcagaaggctaaacctaatctttagtggtgttgaccgtgccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaacagaaaggttgcagaaggctaaacctaatctttagtggtgttgaccgtgccttct 380

                                                                       
Query: 181 ctcgccacagcacaccacggcaaagacccctgaggcagctgcccttccctctattcccat 240
           ||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ctcgccacagcacaccgtggcaaagacccctggggcagctgcccttccctctattcccat 440

                                                                       
Query: 241 aacacccagtaaacgacaaatgaaagcatgaagacctttccccattatgacacaagcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aacacccagtaaacgacaaatgaaagcatgaagacctttccccattatgacacgagcaaa 500

                                                                       
Query: 301 attggccagatcccagaggattggcatctgttttggcttctgaattctccttctgctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attggccagatcccagaggattggcatctgttttggcttctgaattctccttctgctgga 560

                                                                       
Query: 361 atgtagaaattaccccagggtgattcagtcctgtctcaccagcccttgagatgacatggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtagaaattaccccagggtgattcagtcctgtctcaccagcccttgagatgacatggc 620

                                                                       
Query: 421 aacagacgtcacagcatggctctggaaatcactcttacccctggctatgttttgcaagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacagacgtcacagcatggctctggaaatcactcttacccctggctatgttttgcaagcc 680

                                                                       
Query: 481 cccaacacagctgacaaatctcagagcagtacctcctcctgcatccttagagacacagtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccaacacagctgacaaatctcagagcagtacctcctcctgcatccttagagacacagtc 740

               
Query: 541 tcag 544
           ||||
Sbjct: 741 tcag 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space:   498756
Effective search space used:   498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)