BAC Information

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BAC

Clone NameMSMg01-074A21
Chromosome8 (Build37)
Map Location 111,765,702 - 111,766,223
singlet/doubletsinglet
Overlap genenone
Upstream geneAtbf1
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074A21.T7 (MSMg01no074_a21.b1)MSMg01-074A21.TJ (MSMg01no074_a21.g1)
ACCAG297200AG297201
length709709
length of high quality
(start - end)
524 (60 - 583)286 (69 - 354)
definitionCHROMAT_FILE: MSMg01no074_a21.b1 PHD_FILE: MSMg01no074_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:18 2005CHROMAT_FILE: MSMg01no074_a21.g1 PHD_FILE: MSMg01no074_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCAAAA
AAGATACAGCTAAAACTAGAGCTACTATATGATCCAAATTTGGCACTCCA
GAGTATATGCCCCCCACTAATCAAAGTCAGCATATCATTAAAATGCAGCA
CCCCGATGGCTATCACTGTTCTGTGTATAATAAAGGTGTGGAATCAACTT
AAGTGCATTGCAACAGATGACTTTTAAAACTCAGCATGCACAGGCATACA
CACATGTGTGCATGCACACATACGCACATGCATACACAAGCCCCATTCAC
CACAGAAAAGCGTAAAACCATTTTATCTGCTGAAACAATGATGGTATTAG
AAATCATCACGTTAAACAAAATCAGCCAGAGTCAGCCAGACAAGCGTCTC
ATGTCTTTGCTAGTGTGTTGAACGTAAAGACAAAAAGGCATGAAAGTAGC
CGTAGAAAGTGGGTCAGGGGATGGAGCAGGGGTAAAAGAGAATGGTGTGG
GCTGGATATTGATACCAAAGTATATGCACGACAATGTCATAATGATTCTT
ATCATCTTGTACAATCAACATGCTTTAAAAAGGGAGGGAGAGAGAGGGAA
GAAGGAAGGAAGGAAGGAAGGAAGGAATCAACCTTTCTCTTTTCCTCCTC
CCCCTTCTTTTTTCCCCTTTCCTTTTTTCCCCCTTCCCCCCTCTCTTTTC
CCTTTTCCA
GAAGTGATAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCCCGAAATACCAAAAGCTGGGCATGGTGGCACACTCCTTTAATCC
CAGCACTTGTTACCCCGAGGCAGGGGGATTTCTGAGTTCAAGGCCAGCTT
GGTCTACAAAATGAGTTCCAGGACAGCCAGGGCTATAAAGAGAAACCCTG
TCTCAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACA
AAACAAAACAAAACAAAAAACAACAACAACAAAAAGAGAATTCCAACAAT
GAAATCAGCCACAATCTTATAATTGCCCGGCACTTACAGGAGCATGACTT
GGATTTTTTTCTCTCCGCCCACCCACAAGGACGCCTATAGGTGAAGGTCT
CTCAGAATGATTGGCTAGAAAACACATAAGCATGTATTGGGGGGAAATTA
CTGCTACCCTAACAGTTTCATTTAATAAGAACCACAATATTTATGAACCA
ATTCGCACTATCTTTACATCATTTCATTTAATTTCTTTGCATGAACTCAA
ATCTGAAGCACGTGCGGATCCTCTTGTCTGCTCTTCGTCGCCACACAAGG
TATCCCCCATAACTAAATTCTGCTCTCTGTTCTCATCTTCAACTGCATCT
TCTAATCGTACCTTTCCCCCCTGAGACTTCCTACGTCAACATCTGTGGAT
TCTGCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_a21.b1 MSMg01no074_a21.b1 CHROMAT_FILE:
MSMg01no074_a21.b1 PHD_FILE: MSMg01no074_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:18 2005
         (524 letters)



>mm_chr8_111765500_111766423
          Length = 924

 Score =  870 bits (450), Expect = 0.0
 Identities = 505/524 (96%), Gaps = 2/524 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaactagagctactatatgatccaaatttggcactccagagtatatgccccccacta 60
           ||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||| ||
Sbjct: 203 ctaaaactagagct--tatatgatccaaatttagcactccagagtatatgcctcccaata 260

                                                                       
Query: 61  atcaaagtcagcatatcattaaaatgcagcaccccgatggctatcactgttctgtgtata 120
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 attaaagtcagcatatcattaaaatgcagcacccccatggctatcactgttctgtgtata 320

                                                                       
Query: 121 ataaaggtgtggaatcaacttaagtgcattgcaacagatgacttttaaaactcagcatgc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 acaaaggtgtggaatcaacttaagtgcattgcaacagatgacttttaaaactcagcacgc 380

                                                                       
Query: 181 acaggcatacacacatgtgtgcatgcacacatacgcacatgcatacacaagccccattca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggcatacacacatgtgtgcatgcacacatacgcacatgcatacacaagccccattca 440

                                                                       
Query: 241 ccacagaaaagcgtaaaaccattttatctgctgaaacaatgatggtattagaaatcatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacagaaaagcgtaaaaccattttatctgctgaaacaatgatggtattagaaatcatca 500

                                                                       
Query: 301 cgttaaacaaaatcagccagagtcagccagacaagcgtctcatgtctttgctagtgtgtt 360
           | ||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct: 501 cattaaacaaaatcagccagactcagtcagacaagcgtcccatgtctttgctagtgtgtt 560

                                                                       
Query: 361 gaacgtaaagacaaaaaggcatgaaagtagccgtagaaagtgggtcaggggatggagcag 420
           ||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||
Sbjct: 561 gaacgtaaagacaaaaaggcatgaacgtagacgtagaaagtgggtcagggggtggagcag 620

                                                                       
Query: 421 gggtaaaagagaatggtgtgggctggatattgataccaaagtatatgcacgacaatgtca 480
           ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 621 gggtaaaagagaatgatgtgggctggatattgataccacagtatatgcacgacaatgtca 680

                                                       
Query: 481 taatgattcttatcatcttgtacaatcaacatgctttaaaaagg 524
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 taatgattcttatcatcttatacaatcaacatgctttaaaaagg 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)