Query= MSMg01no074_g13.b1 MSMg01no074_g13.b1 CHROMAT_FILE:
MSMg01no074_g13.b1 PHD_FILE: MSMg01no074_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:46 2005
(248 letters)
>mm_chr8_118262532_118263179
Length = 648
Score = 416 bits (215), Expect = e-121
Identities = 234/241 (97%), Gaps = 4/241 (1%)
Strand = Plus / Plus
Query: 4 ggaattctaagacttc-cc-ggattttctgacccttgtgtttgggtgactgctgctattc 61
||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaagac--caccaggattttctgacccttgtgtttgggtgactgctgctattc 261
Query: 62 atgaatatttcttctccggtgatggcaaagggactttgtaaagttacagatcagtttact 121
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgaatatttcttctagggtgatggcaaagggactttgtaaagttacagatcagtttact 321
Query: 122 ttatggttagttatgtaggcgagtctaataaagcccatgagcccttagaagacagagggt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttatggttagttatgtaggcgagtctaataaagcccatgagcccttagaagacagagggt 381
Query: 182 tctcctggtagtggtagaaaggggagttagactgatgtattaagaggttgagatatagga 241
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 382 tctcctggtagtggtagaaaggggagttagacagatgtattaagaggttgagatatagga 441
Query: 242 g 242
|
Sbjct: 442 g 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no074_g13.g1 MSMg01no074_g13.g1 CHROMAT_FILE:
MSMg01no074_g13.g1 PHD_FILE: MSMg01no074_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:46 2005
(280 letters)
>mm_chr8_118406553_118407232
Length = 680
Score = 499 bits (258), Expect = e-146
Identities = 276/284 (97%), Gaps = 6/284 (2%)
Strand = Plus / Minus
Query: 1 atgca-tttttttgcagccaatggttaatggttagaaacccgtccat---accacgtggt 56
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 616 atgcattttttttgcagccaatggttaatggttagaaacccgtccataaaa--acgtggt 559
Query: 57 cagcaggctataattttccctcttgaagattgcctcattgtgtagagatttttgctttat 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cagcaggctataattttccctcttgaagattgcctcattgtgtagagatttttgctttat 499
Query: 117 ttgtttgtttgtttgtttttaaagaaacttctgatgagatactaaaaataacgtggggtt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgtttgtttgtttgtttttaaagaaacttctgatgagatactaaaaataacgtggggtt 439
Query: 177 tattgttgaccaggatggctaagtgtttctaaatcagggtttcagtggatttgctgccgt 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tattgttgaccaggatggctaagtgtttctaaatcagggtttcagtggatttgctgccgt 379
Query: 237 taaatgtgagttttctatggtagggtgaaagtggggtgaagagg 280
|||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 378 taaatgtgagctttctatgggagggtgaaagtggggtgaagagg 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space: 181841
Effective search space used: 181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
