BAC Information

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BAC

Clone NameMSMg01-074K17
Chromosome8 (Build37)
Map Location 64,552,192 - 64,552,312
singlet/doubletsinglet
Overlap geneAnxa10
Upstream geneNek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672
Downstream geneLOC100040775, LOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074K17.T7 (MSMg01no074_k17.b1)MSMg01-074K17.TJ (MSMg01no074_k17.g1)
ACCAG297670AG297671
length712788
length of high quality
(start - end)
287 (63 - 349)119 (123 - 241)
definitionCHROMAT_FILE: MSMg01no074_k17.b1 PHD_FILE: MSMg01no074_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:06 2005CHROMAT_FILE: MSMg01no074_k17.g1 PHD_FILE: MSMg01no074_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCTATACGACTCCTATTCCCAGAGGATCCGCGGAATTCAGT
TATTTACCCCAGGTTCCCTTCTGATGATCCTAGGAATCAGCATCCTGTGA
CCCCAGTCCTTTGCCTCTTAGGAAACAGCAAGCACACATTTTCTTTTAAT
ATTGCAAAAGAATTTAGAGGTCTTCTTCCTGTCTCTGTTAAGAACAGAGA
ATAAACTAGCTGGTTGGGACCCTGTCTTGAAATTAACATTTCTACCACAC
CTGGGTCTAACCTTGCTGTGTCCCAGGCTGACCTTGAATTTAGGAATCTA
TCTGCTTTGTATCTTCCTGCCTTTTATCTTTCTGACAAGCTTGCTCATTA
ATGTTTTTTGCCTCCGCCCCCTTTAGCCCCTCATAAAATTCATATTGCAT
CCTTCTACTCCTTGCATAGTTGAGTAATTATATATTTTCAAACTCGTGTG
TGTATCCAAGCTCTTTGCCTTATGGGTTGTCTTGAAGGTCCTAGTATTTA
CTTATTTTGCTGACACATTACCCACATCTTCCACTCCTACATTCTTGCTG
CCTCTGATTATCATGAAGTCCTTATTGCTCCCCGAGAGAACATTCGTTGG
AGGAATGTGATCATATGCGCACTCATAGGCTCCTACTTGGTCCTTGCCCC
ATCGCCCGTACTTTGTTCCTTCCGCTTTTACTCGCTTTCTCTCATGGCTC
TCCCATGTACAG
GCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGTGGAATCAGTGATCTGAGTTTAAAGAATA
AAAGTACAAATTCCCACGGGTTCAGAGGACATTTTAAAGGTCATGGACTT
TATTTTTATAAAGTGTGTGTTACAGTGTGTACGTTTTAATAAGTATGCTA
TGATATGTGAGTTCTGGAGAGGGGTGTGTATGTGTGTGCCATCTTCCCTT
CTCTCCTTTTCTCTCTCCCCCTCCCTCTCTTCTCCCTTCCCGCTTCTCCC
TTTTCCCTCACTGTTTTTTTTCTCTGTTCCTCGTCTTTCCGTCTATTTGC
TTCTTTTTTTAGTGTTTTCCCCCCCCCCCCCCCCCTCCGATTCTTCTCCC
TCCTTTTCCCCCTTTTTTCTCCCCCCTCACAAAAAAAAAAACACTTTTTT
GGTCGCGGGCGTCCTTTCCCCCTCCCCCTTTCCCTTCCCTTTCCCTTCCC
CTTTTCTTTTCCCTCTTTCCCCCCCCTTCTACCCCTAATCATTCCCATTC
CCTCTTTCCTCCCTTCTTTTATACCCTTCATCTTTATCCCTACCCCCCAC
CTTTTTTCTCCCCCCTCTCCTTCTCTCCCTCCCTTACTTATTTTTTTCCC
CTCCCCCCCCCTATTTTTTACTCCCTCCCCTCCTTCCTTCTTATACCATC
ATCATCCCCTGTTTCCCTCCTTCCATTTTTTAACATTTTACCCACCCTCT
CCTCCTTCCCTCTCTACCCTCTCCTGATTTCCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_k17.g1 MSMg01no074_k17.g1 CHROMAT_FILE:
MSMg01no074_k17.g1 PHD_FILE: MSMg01no074_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:06 2005
         (119 letters)



>mm_chr8_64551992_64552515
          Length = 524

 Score =  195 bits (101), Expect = 6e-55
 Identities = 114/121 (94%), Gaps = 5/121 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaggacattttaaaggtcatgga-----ctttatttttataaagtgtgtgttacagtg 55
           |||||||||||||||||| ||||||     ||||||||||||||||||||||||||||||
Sbjct: 321 cagaggacattttaaaggccatggacttttctttatttttataaagtgtgtgttacagtg 262

                                                                       
Query: 56  tgtacgttttaataagtatgctatgatatgtgagttctggagaggggtgtgtatgtgtgt 115
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtacattttaataagtatgctatgatatgtgagttctggagaggggtgtgtatgtgtgt 202

            
Query: 116 g 116
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 524
Length adjustment: 8
Effective length of query: 111
Effective length of database: 516
Effective search space:    57276
Effective search space used:    57276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)