BAC Information

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BAC

Clone NameMSMg01-074N17
Chromosome8 (Build37)
Map Location 107,426,868 - 107,427,269
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760
Downstream geneCes5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074N17.T7 (MSMg01no074_n17.b1)MSMg01-074N17.TJ (MSMg01no074_n17.g1)
ACCAG297812AG297813
length698679
length of high quality
(start - end)		545 (46 - 590)524 (60 - 583)
definitionCHROMAT_FILE: MSMg01no074_n17.b1 PHD_FILE: MSMg01no074_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:22 2005CHROMAT_FILE: MSMg01no074_n17.g1 PHD_FILE: MSMg01no074_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAGATCTTCGAGATTTTTTTTTTCTCTTCAGTAATTTCATAAAT
GAAAACAATGTGTCATATGCACGCCTACCTATGCCCCATCACTTCCAAAA
CCACCCACCCACCACCACTTTGTTTTACATTATTTCTAGTTGTTCTGTTC
CTCCTTCTCTTTTTCCTTCTCCTCTTCCCCTTCTTTAATAACCCACTGAG
TCAAATTAGATTTGTATAATTTTTTGTGTATCCCTGGCTGTCTTGAAATT
CCGTCTGTAGACAAGGTTGGCCAGGGACTCAGAGATCCACCTTCTTCTGC
CTTCAGAGTGCTGGATTAAGGGGGTGCAACAACACCCCTAACATTCATTT
TTTTAAACTTTCTATGCGCAGACAGACCACAACTAAAATTTCCAGTTTTT
CCAGAAGCTTGCTGTATAGCTCGGGCAAGTCTTAACTTGTGATCCCTGGC
CTCAGCTCTCTGAGCAACTAAGATTTCAAGTCCTATGTCATCTGAGCTGG
TTTTTTTTACTTTTTATGGTGCCCAGGGCTTTGTACATGCAGGGCAAGCT
GTCTACCACTGCTATGTCCCTAACCTTACAACTTCTTAAAGTGTTTAATG
AGTATCTCATGACATAACAATTCTGCTTTAGAATTTAAAGCCAACAAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTTTAAGCCTCTCAGAAAATAATGGGGAAAAGCTATTTCCT
GTGTTTTATGCTTTTTCTAATGAAAAGAATGCTAGAGTTCTGCTGTGTGA
GGGCTGTGTTGCTCAGGGCTGGGATGGTAGAGGGTACTCACGGTGTAGAC
CATCTCAGAGGTGTTGGAGATAAGGTTAGGCAGCAGGGACACCCCACTCT
CCATGATGGCACCATGGAAGAGCCCTTGGGACATGGGGGACACAACATGT
GAAGAAACACTTGTGCCACCTGCAGACTCGCCAAAAATAGTGACCCGGTC
AGGATTGCCTCCAAAGTGGGCGATGTTCTGCTGGACCCAGCGTAGGGCAG
CCACTTGGTCCAGGTATCCCCAGTTGCCTCTGGCATGGTCATCTCCTGTG
CTGAGAAGTGGAAGGGACATGGATCACAGAGCTGTCCTATTTATGTTTAA
TATAAAGCCCCCATTGCCTTATCCAGCCCCAGGCTCACCTGAAGAAGCCC
AGGATACCCAGGCGGTACTGGATAGTGACCACCACCACATCTTCAGTGGC
TGCCAGCATGGACCCATCATACGTGGAAGCCATTGCCCAACATAGTCCAC
CACCATGGATCCACACCATCACCTGGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_n17.b1 MSMg01no074_n17.b1 CHROMAT_FILE:
MSMg01no074_n17.b1 PHD_FILE: MSMg01no074_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:22 2005
         (545 letters)



>mm_chr8_107426325_107427269
          Length = 945

 Score =  746 bits (386), Expect = 0.0
 Identities = 398/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 144 gttgttctgttcctccttctctttttccttctcctcttccccttctttaataacccactg 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 gttgttctgttcctccttctctttttccttctcctcttccccttctttaataacccactg 886

                                                                       
Query: 204 agtcaaattagatttgtataattttttgtgtatccctggctgtcttgaaattccgtctgt 263
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 885 agtcaaattagatttgtataattttttgtgtatccctggctgtcttgaaattccctctgt 826

                                                                       
Query: 264 agacaaggttggccagggactcagagatccaccttcttctgccttcagagtgctggatta 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 agacaaggttggccagggactcagagatccaccttcttctgccttcagagtgctggatta 766

                                                                       
Query: 324 agggggtgcaacaacacccctaacattcatttttttaaactttctatgcgcagacagacc 383
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 765 agggggtgcaacaacacccctaacattcatttttttaaactttctatgtggagacagacc 706

                                                                       
Query: 384 acaactaaaatttccagtttttccagaagcttgctgtatagctcgggcaagtcttaactt 443
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 acaactaaaatttccagtttttccagaagcttgctgtatagctcgggcaagtcttaactt 646

                                                                       
Query: 444 gtgatccctggcctcagctctctgagcaactaagatttcaagtcctatgtcatctgagct 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtgatccctggcctcagctctctgagcaactaagatttcaagtcctatgtcatctgagct 586

                                                     
Query: 504 ggttttttttactttttatggtgcccagggctttgtacatgc 545
           ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 585 ggtttcttttactttttatggtgcccagggctttgtacatgc 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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