BAC Information

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BAC

Clone NameMSMg01-074N24
Chromosome8 (Build37)
Map Location 61,144,794 - 61,145,172
singlet/doubletsinglet
Overlap gene4930431L04Rik
Upstream geneLOC100040711
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074N24.T7 (MSMg01no074_n24.b1)MSMg01-074N24.TJ (MSMg01no074_n24.g1)
ACCAG297826AG297827
length714789
length of high quality
(start - end)
411 (36 - 446)376 (127 - 502)
definitionCHROMAT_FILE: MSMg01no074_n24.b1 PHD_FILE: MSMg01no074_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:23 2005CHROMAT_FILE: MSMg01no074_n24.g1 PHD_FILE: MSMg01no074_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGATCCGCGGAATT
CTCCACTAACTCATCCGGTCCTGTGTTTTTTTTTTTTTTTCCTTTGGGAG
ACTATTGATGACAGCTTCTATTTTGTCAGGGGTTATGGGACTGTTTAGAT
GGCTTATCTGATCCTGTTTTAACTTTGGCAACTTGTATATGTCTAGAAAG
TTGTCCATTTAATCCAGATTTTCCAATTTAGTTGAATATAAACTTTTGTA
GTAGTAGCTAGTGATTTTTTTTGAATTCCCATAGCTTCCATTGTTATGTC
TCCCTTTTCATTTCTGATTTTATTAATTTGGATACTGTCTCTGTGCCCTC
TGGTTAGTCTGGCTAAGGGTTTATTTATCTTGGTTTTCTCAGAGAACCAT
CTTCTAGCTTTGTTGATTCTTTGAACAGTTCTTTTTGTTTCTATTTGGCT
GATTTCAGCCCTGCGTTTGATTATTTCCTGCTGTCTACTCCTCTTGGGTA
TATTTGCTTCTTTCTGTTCTAGAGTTTTCATGTGCGCTGCCAGGCTGCTA
TCGCAAGGCCTCTCCAGTTCCTTTTTGGAGGCCCTTACACCTATGTGTTT
TTCTATTAAAACTGTTTTCATTGCGTCCCATACGGTTTGCCATGATATGC
CTCCATTTCCATTATAGTTACAACGTTTTTAATTTCTTTACTTAATTCTT
CTTTGAAAAATTAT
TTTTTTNNNNNNNNCCCCNCCCCCCTCCCCCCCCCCCCCCCNCTATCCAN
NNNACGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGATAACAGAGTGGGGATAGCT
GGGGATGAATAAGAACTGAACAAAAAATAAAGTGAGACTTTCATTTATCA
TATATGTTTTGAATTACAGGAGTTATGATACTTTGTAATTTAAAGAGAGA
ATGTTTTGGATATGTGAATCAAAGCTGTACTATCCAGGAAACAGAATAGA
GAGATAAGGTTATGTTGAATAGTACATGCAGTAAGGAAATTATGGTACTA
TGGGCAGAGATTTTACTGGTAGAAAGTTAAAGATACATTTTCCAAAATAA
CATGTTTTTTTATTATTTGAGAATTTTACATAAGGCACTAAACTCATTTC
CCAGTATGACTCCTAATCCTTCTGACCTCCAACTATCAAAAAGAGGAGGA
GGAAGATCTCCCCCGACGACTCTCTTTCTCTATTTTATACTAACCATCAT
CCACTTTCTTAATATTAACATATACATATATTTCCCCTTTTTATATCCTA
CCCCCCCCTCACTCATTAAGTTATCTCATTTACTACCCTCCTCCTTCCTA
AACATTTATCTCACCCCAACCTTTCTACCATTTATTTTTCAAATTTTCTA
TGTTCAGTGTGTTAAAGTCCGTTTTCTCCCTCTTAATTATCCCCCTTACT
CCCCCTAACCCTAATTATATTTATATTTACACAATAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_n24.g1 MSMg01no074_n24.g1 CHROMAT_FILE:
MSMg01no074_n24.g1 PHD_FILE: MSMg01no074_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:23 2005
         (376 letters)



>mm_chr8_61144594_61145370
          Length = 777

 Score =  671 bits (347), Expect = 0.0
 Identities = 370/379 (97%), Gaps = 5/379 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgataacagagtggggatagctggggatgaataagaactgaacaaaaaa-taaagtga 59
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 actgaaaacagagtggggatagctggggatgaataagaactgaacaaaaaaataaagtga 260

                                                                       
Query: 60  gactttcatttatcatatatgttttgaattacaggagttatgatactttgtaatttaaag 119
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 gactttcatttatcatatatgttttgaagtacaggagttatgatactttgtaatttaaag 320

                                                                       
Query: 120 agagaatgttttggatatgtgaatcaaagctgtactatccaggaaacagaatagagagat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaatgttttggatatgtgaatcaaagctgtactatccaggaaacagaatagagagat 380

                                                                       
Query: 180 aaggttatgttgaatagtacatgcagtaaggaaattatggtactatgggcagagatttta 239
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 aaggttatgttgaatagtacatgcagtaaggaaattatggtaccatgggcagagatttta 440

                                                                       
Query: 240 ctggtagaaagttaaagatacattttccaaaataacatgttttttt-attatttgagaat 298
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ctggtagaaagataaagatacattttccaaaataacatgttttttttattatttgagaat 500

                                                                       
Query: 299 tttacataaggcactaaactcatttcccagtatgactcctaatccttctgacctccaact 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttacataaggcactaaactcatttcccagtatgactcctaatccttctgacctccaact 560

                              
Query: 359 atcaaaa---agaggagga 374
           |||||||   |||||||||
Sbjct: 561 atcaaaatgaagaggagga 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 777
Length adjustment: 9
Effective length of query: 367
Effective length of database: 768
Effective search space:   281856
Effective search space used:   281856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)