BAC Information

Click to search

BAC

Clone NameMSMg01-074P04
Chromosome8 (Build37)
Map Location 77,734,288 - 77,734,665
singlet/doubletsinglet
Overlap genenone
Upstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5
Downstream geneRasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074P04.T7 (MSMg01no074_p04.b1)MSMg01-074P04.TJ (MSMg01no074_p04.g1)
ACCAG297881AG297882
length706702
length of high quality
(start - end)
611 (48 - 658)374 (75 - 448)
definitionCHROMAT_FILE: MSMg01no074_p04.b1 PHD_FILE: MSMg01no074_p04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:29 2005CHROMAT_FILE: MSMg01no074_p04.g1 PHD_FILE: MSMg01no074_p04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCTTAGCTCTGTACCCCATTTCTAATTAGGTTATTTGGTTTG
TTGGAGTCTAACTTCTTCAGTTTCTTATATATTTTAGATACTAGCCCTCT
GTCAGATGTAGGGTTAGTGAAAATCTTTTCCCAATCTGTAGGTTGCTGTT
TTGTCATATTAACAATGTCCTTTGCCTTACACAGCTTTTCAGTTTCATGA
GATCCTATTTATCAATTGTTGATCTTAGAGCCTCAGCCATTGGTGTTCTG
TTCAGGAAATTATCTCCTGTACCAATGTGTTCAAGGCTATTTCTCACTTT
CTCTTGTAACAGATTTAGTGTATCTGATTTTATGATGAGGTCCTTTATGA
TGGACTTGACTTTTGTGCAGGGTTAAGAATATTGGATCTATTTGCATTCT
TTTACATGCAGATGCCAGTTAGATCAACAACATGTGTTAAAGATGCTTTC
CTTTTTCCACTGTATGGTTTTGGCTTCTTTGTTAAAGATCAAGTGTCCAT
AGGTATGTGGGTTCACTTCTGGGTCTTCAATTCTATTCCACTGATCAACC
TGTCTGTTTCTATATTGATATCATGCAGTTTTTATCACTATTGCCTTATA
TTATAGCTTAACATCAGGGATGGTGACGCCTCTGGAAATTATTTTATTGT
ACTAGA
GAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGAAGCAGAGGCAGGCATCTCTCTG
TGAGTTCTAGGCCAGCTAGGACTTCATAGAGAGACCCTGTCTTAAAACAA
ACAAACAAACAAACAAACAAACAAACAAACAAACCTAAAGACTCCTCCCA
ACCCCCTCTCTGCTCAAGAAAAGGTCAGATGTTGATGGGGATGGGGTTAA
GAGGACCAGGAGGTTCAGACCATCGGGAATACTGGAAGAAAGCAGTGTGG
GTGAAACCCTTTGGGAGTGTGCTTTGAAGGATGTGTAGTGTTCAACCTTG
GGAAAGTGTTATAGTGATGGTGGGGACCCATGCACACAAAGCTTGCAATA
GTGACACCCTGCTTCTTTTTAGGAACATGGGAGTAATGAGATTTGTCTTG
TGGCTCAGGTGGAGAGGCTTATATTTACTATCTCACGCCTTGAGCAGCTC
TGGAATAATCCTTGAGTAAGGGTGGATATATAACAAAAACAGAAATTATG
TCTTTATAAATACTATAGCGATACCATAATGAATTTCAAGACCCTGAAAC
TTATATTAATATTCTGCACATCCCCAACCGCACGGCGCCGCCCATCGATA
TCTGCGCCTTCCCGTAACTCCCCGTTCACTTTTTTTTTACACTTCCTCCC
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_p04.g1 MSMg01no074_p04.g1 CHROMAT_FILE:
MSMg01no074_p04.g1 PHD_FILE: MSMg01no074_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:29 2005
         (374 letters)



>mm_chr8_77734092_77734865
          Length = 774

 Score =  681 bits (352), Expect = 0.0
 Identities = 370/378 (97%), Gaps = 4/378 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaagcagaggcaggcatctctctgtgagttctaggccagctaggacttcatagagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 aggaagcagaggcaggcatctctctgtgagttctaggccagctaggacttcatagagaga 256

                                                                       
Query: 61  ccctgtcttaaaacaaacaaacaaacaaacaaacaaacaaacaaacaaac----ctaaag 116
           | ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 257 cactgtcttaaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacctaaag 316

                                                                       
Query: 117 actcctcccaaccccctctctgctcaagaaaaggtcagatgttgatggggatggggttaa 176
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 actcttccaaaccccctctctgctcaagaaaaggtcagatgttgatggggatggggttaa 376

                                                                       
Query: 177 gaggaccaggaggttcagaccatcgggaatactggaagaaagcagtgtgggtgaaaccct 236
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 377 gaggaccaggaggttcagaccatcggaaatactggaagaaagcagtgtgggtgaaaccct 436

                                                                       
Query: 237 ttgggagtgtgctttgaaggatgtgtagtgttcaaccttgggaaagtgttatagtgatgg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttgggagtgtgctttgaaggatgtgtagtgttcaaccttgggaaagtgttatagtgatgg 496

                                                                       
Query: 297 tggggacccatgcacacaaagcttgcaatagtgacaccctgcttctttttaggaacatgg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tggggacccatgcacacaaagcttgcaatagtgacaccctgcttctttttaggaacatgg 556

                             
Query: 357 gagtaatgagatttgtct 374
           ||||||||||||||||||
Sbjct: 557 gagtaatgagatttgtct 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)