Query= MSMg01no074_p22.b1 MSMg01no074_p22.b1 CHROMAT_FILE:
MSMg01no074_p22.b1 PHD_FILE: MSMg01no074_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:33 2005
(674 letters)
>mm_chr8_62675358_62676431
Length = 1074
Score = 1265 bits (654), Expect = 0.0
Identities = 666/670 (99%)
Strand = Plus / Plus
Query: 5 gaattcaatcccaaactcacagtgccatcttggaacaagactgcaaaaaaaggcagtcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcccaaactcacagtgccatcttggaacaagactgcaaaaaaaggcagtcta 264
Query: 65 tatctgttaaaaattctaaaataaattttttagccttaatggggcaattagaaccaggaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatctgttaaaaattctaaaataaattttttagccttaatggggcaattagaaccaggaa 324
Query: 125 aacacgtgtacactaggttatcaagtattcaggctgcagcctatagaaacacaagactta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacacgtgtacactaggttatcaagtattcaggctgcagcctatagaaacacaagactta 384
Query: 185 aggagatttaaggaagcagtaacaacttatggtttacattcaccacatgtaaaacagaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggagatttaaggaagcagtaacaacttatggtttacattcaccacatgtaaaacagaca 444
Query: 245 cttaataactagtctgtgcaaaatcaaataattccaaaagaatggagggatttaatgaca 304
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 cttaataactagtccgtgcaaaatcaaataaatccaaaagaatggagggatttaatgaca 504
Query: 305 accatctcagagcctggtgctcaggtaagggataacatggtagacaataaggcttcagcc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accatctcagagcctggtgctcaggtaagggataacatggtagacaataaggcttcagcc 564
Query: 365 atggagaaatgaaatggaagtagaagcattttcattgccaagtatcacttactaggtgaa 424
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atggagcaatgaaatggaagtagaagcattttcattgccaagtatcacttactaggtgaa 624
Query: 425 ggtctatattccgaattgagaataaacgttacctatgatgatgctgtctaagaacaatag 484
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 625 ggtctatattccgaattgagaataaacgttacctattatgatgctgtctaagaacaatag 684
Query: 485 tcttaaatgcttaaaacaatgttgaacagtgacatactgaattatttacaaataataaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcttaaatgcttaaaacaatgttgaacagtgacatactgaattatttacaaataataaca 744
Query: 545 ataaataattacaagataacccagggttcaaataaatctttaaatgacttttacagagat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ataaataattacaagataacccagggttcaaataaatctttaaatgacttttacagagat 804
Query: 605 taactacagctctgaatacagagccaagtgctagaggacttctaattaaatctttagctt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taactacagctctgaatacagagccaagtgctagaggacttctaattaaatctttagctt 864
Query: 665 ttgaaaatgc 674
||||||||||
Sbjct: 865 ttgaaaatgc 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_p22.g1 MSMg01no074_p22.g1 CHROMAT_FILE:
MSMg01no074_p22.g1 PHD_FILE: MSMg01no074_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:33 2005
(564 letters)
>mm_chr8_62740528_62741496
Length = 969
Score = 1002 bits (518), Expect = 0.0
Identities = 555/570 (97%), Gaps = 7/570 (1%)
Strand = Plus / Minus
Query: 1 cttctgtctaaaggaaatgcatggacaaagagtggagcagaaactgaaggaaaggctatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 cttctgtctaaaggaaatgcatggacaaagagtggagcagaaactgaaggaaaggctatc 851
Query: 61 cagagactgccccacctagtggtccatcccatctgcagacactaaacccagacactactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 cagagactgccccacctagtggtccatcccatctgcagacactaaacccagacactactg 791
Query: 121 atgatgtgtttcaattcttgccctggcttggtatcaccttcctgacttaggaattgctcc 180
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 790 atgatgtgtttcaattcttgccctggtttggtatcatcttcctgacttaggaattgctcc 731
Query: 181 agtcatggttttacatcgattctggaggcataaaccccgggggatctgtgtctgttccta 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 730 agtcatggttttacatcgattctggaggcataaaccctgggggatctgtgtctgttccta 671
Query: 241 catccagtattactctacctgccctcaatcctgaccatgctgggggctataaattggcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 catccagtattactctacctgccctcaatcctgaccatgctgggggctataaattggcag 611
Query: 301 ctgcaatggtctttgggactgaaaataaattttgactttacctttcttcaagccatcggc 360
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ctgcaacggtctttgagactgaaaataaattttgactttacctttcttcaagccatcggc 551
Query: 361 atctacctca----t--ctacagacagcctgtaggaagactgacctgggatgtggctgta 414
|||||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atctacctcaaaagtgacta-agacagcctgtaggaagactgacctgggatgtggctgta 492
Query: 415 caatggttggtactagaataaacctcatctctgattgaagcatgaatttgccccttccaa 474
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 491 caatggttggtactggaataaacctcatctctgattgaagcataaatttgccccttcaaa 432
Query: 475 atctgtgtcattttaattgaggtcaggacttttgatatgaaatgtaatctcctattttct 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atctgtgtcattttaattgaggtcaggacttttgatatgaaatgtaatctcctattttct 372
Query: 535 ggttgtttttgtaccaagatcatgtggaat 564
||||||||||||||||||||||||||||||
Sbjct: 371 ggttgtttttgtaccaagatcatgtggaat 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 969
Length adjustment: 10
Effective length of query: 554
Effective length of database: 959
Effective search space: 531286
Effective search space used: 531286
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
