BAC Information

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BAC

Clone NameMSMg01-075A06
Chromosome8 (Build37)
Map Location 79,695,370 - 79,787,149
singlet/doubletdoublet
Overlap geneNr3c2, Arhgap10
Upstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847
Downstream geneLOC100039235, AI931714, Tmem34, Ednra, EG622803, Ttc29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075A06.T7 (MSMg01no075_a06.b1)MSMg01-075A06.TJ (MSMg01no075_a06.g1)
ACCAG297933AG297934
length748708
length of high quality
(start - end)		296 (43 - 338)433 (77 - 509)
definitionCHROMAT_FILE: MSMg01no075_a06.b1 PHD_FILE: MSMg01no075_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:34 2005CHROMAT_FILE: MSMg01no075_a06.g1 PHD_FILE: MSMg01no075_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,786,859 - 79,787,149)(79,695,370 - 79,695,801)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGA
ATTCTCCTGGGAGATTTTCTTTTCTCCACTATTTTGGAGGGAAAGTAGGT
AGGGCATTTGAAAGAATTAAGTATTAAAATTGTAAGGCATATTACAATAA
GTAATTAACTAAAATCTGGGTGGTTACATAATGATTACAATATCTGTGGT
TTTAGGAGGGTGGTTCTTTAAAAAGCTAGCCGATGAAGGTGAATTGTACC
ATGGGCCGTGCCTGGAGTCCTGTTTGTGAACTTGTGGAGTGGAGTGGTTT
TATTTGCCTGTTTAATGCCTTACTTCATTCTTTCTGAGCGGATAGCTTTG
CAGCTTCTCTTCTGCCATGCAGATCTCCTCTCATCACCGCTTCCTATTCT
CCAACAGTTTCAAGATCTCCCCCCCCCCACTGCTTCCAGACTTGTGTTTT
GCAGCTATTTATGAGCCTAACACCCCCCACAACTCTGAGCCTGTGCAACC
TCAAATGCCACCGTCCCCGCCCCCGTGCGATCAGTTTAGCCAGTAATAGC
TGTCTCCCTACCCCCCCCTATTACCTCGCCCTTTTTTGTAAGCCCCCGCG
TTCTCACGCCCTCTTGTTTTTCCCACCCCCTCTCCTCTTCCACTTTCCTT
CTCCCCCCTCCTCTCTTTTCCCTTCCGCACTCACCCTCTTAGAGCCCGCT
TCTCTTTTCCCCCGTCTCCCTCCTCCTCGCCCACCCCCCTATGTTTCN

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCCTGGGTCTTCCCAATGATGA
CCTGGGGCCAAAGTTGAACAAGTTGGGAGGTCATCTCTGTTTCCAGGGTC
TCCAGACTCTTCCATCAGTCACCAGAAGCTTCTGGTTAGACACTGTTGCC
TTTATGAAGCTCAAGAAGGGCTCTTAACCAACATGTCTTGGAAGAAAATA
AATTAACATGTAGTTGTGGATGGAGAACAGGAAGCGCTGTGATGTTTATC
GCCTTCTCCTGCCCCAAGTAGCTAAATAGAGCACCCTATGGTGTTTTCCC
AGAATTGTCATCTCCTCAATCTTTGGTTAATGTCACCTCTGTGTATGCAT
AAGAATTCTTTTGTAGTGGCTCCCTGTGGATACAAAGTTAAACTTTGTTT
TTATTCTAAGCACAAGAACCTAGAAGGGAGAGAGAGGGAGGAGAGGGAAG
GGGAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNTTNNNNTGTTNNTNGNT
TTNGGTGTTTGTTTTTTGTTGTTGTGGCTCGCGTGGTTCGCTTTTTTTTG
TTCCTCCCCTGCCTCTTTCCCTCTCTCTCTTCCCCCTTCTCGTCCTTTTT
CTCCCTTCTCTTTTCCTCCTCCCTCTCTGCTTCTCCCTTTCTCTTTCCCC
CGCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_a06.b1 MSMg01no075_a06.b1 CHROMAT_FILE:
MSMg01no075_a06.b1 PHD_FILE: MSMg01no075_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:34 2005
         (296 letters)



>mm_chr8_79786654_79787349
          Length = 696

 Score =  555 bits (287), Expect = e-162
 Identities = 290/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctcctgggagattttcttttctccactattttggagggaaagtaggtagggcat 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ggaattctcctgggagattttcttttctccactattttggagggaaagtaggtagggcat 437

                                                                       
Query: 66  ttgaaagaattaagtattaaaattgtaaggcatattacaataagtaattaactaaaatct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttgaaagaattaagtattaaaattgtaaggcatattacaataagtaattaactaaaatct 377

                                                                       
Query: 126 gggtggttacataatgattacaatatctgtggttttaggagggtggttctttaaaaagct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gggtggttacataatgattacaatatctgtggttttaggagggtggttctttaaaaagct 317

                                                                       
Query: 186 agccgatgaaggtgaattgtaccatgggccgtgcctggagtcctgtttgtgaacttgtgg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 agccgatgaaggtgaattgtaccatgggccgtgcctggagtcctgtttgtgaacttgtgg 257

                                                              
Query: 246 agtggagtggttttatttgcctgtttaatgccttacttcattctttctgag 296
           |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 256 agtggagtggttttatttgcctgtttaatgccttacttcactctttctgag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no075_a06.g1 MSMg01no075_a06.g1 CHROMAT_FILE:
MSMg01no075_a06.g1 PHD_FILE: MSMg01no075_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:34 2005
         (433 letters)



>mm_chr8_79695170_79696002
          Length = 833

 Score =  828 bits (428), Expect = 0.0
 Identities = 431/432 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccctgggtcttcccaatgatgacctggggccaaagttgaacaagttgggaggtcatct 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 acccctgggtcttcccaatgatgacctggggccaaagttgaacatgttgggaggtcatct 260

                                                                       
Query: 61  ctgtttccagggtctccagactcttccatcagtcaccagaagcttctggttagacactgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtttccagggtctccagactcttccatcagtcaccagaagcttctggttagacactgt 320

                                                                       
Query: 121 tgcctttatgaagctcaagaagggctcttaaccaacatgtcttggaagaaaataaattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcctttatgaagctcaagaagggctcttaaccaacatgtcttggaagaaaataaattaa 380

                                                                       
Query: 181 catgtagttgtggatggagaacaggaagcgctgtgatgtttatcgccttctcctgcccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgtagttgtggatggagaacaggaagcgctgtgatgtttatcgccttctcctgcccca 440

                                                                       
Query: 241 agtagctaaatagagcaccctatggtgttttcccagaattgtcatctcctcaatctttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagctaaatagagcaccctatggtgttttcccagaattgtcatctcctcaatctttgg 500

                                                                       
Query: 301 ttaatgtcacctctgtgtatgcataagaattcttttgtagtggctccctgtggatacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaatgtcacctctgtgtatgcataagaattcttttgtagtggctccctgtggatacaaa 560

                                                                       
Query: 361 gttaaactttgtttttattctaagcacaagaacctagaagggagagagagggaggagagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttaaactttgtttttattctaagcacaagaacctagaagggagagagagggaggagagg 620

                       
Query: 421 gaaggggagagg 432
           ||||||||||||
Sbjct: 621 gaaggggagagg 632


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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