BAC Information

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BAC

Clone NameMSMg01-075C17
Chromosome8 (Build37)
Map Location 85,072,348 - 85,072,866
singlet/doubletsinglet
Overlap genenone
Upstream geneInpp4b, LOC671182, Il15
Downstream geneEG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075C17.T7 (MSMg01no075_c17.b1)MSMg01-075C17.TJ (MSMg01no075_c17.g1)
ACCAG298051AG298052
length722722
length of high quality
(start - end)
521 (74 - 594)496 (72 - 567)
definitionCHROMAT_FILE: MSMg01no075_c17.b1 PHD_FILE: MSMg01no075_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:46 2005CHROMAT_FILE: MSMg01no075_c17.g1 PHD_FILE: MSMg01no075_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAATAGTTGTTCACCGCTTTTGGTCTCCCTGTAAGAAATGAAATCAT
TGACAACAAATCAAGTAGATATTAGAATTGCTTTTTATCTTCCCAGAGAT
TTATGCTGCAAATTAATCCATATTTACTTTACTAAAAGTGGGAACATATG
TTTTGTAGTTATAAGAAAATACATTTGCATTTCATAACCAAAAAAAGAAT
TATAGATATGGCTAATTTCATATATAACAATTTGACCAAAAATGTATTAA
ACATTTATTTCACAATCAAATATATATCATTCCTTCATCTACAAATAAAA
CCCATAAAAGAATTGGGAATGCCTATCTTAGCAATTGCTAACTTCTAAAA
CATGCTAGAGAGACAAGGGAGATGCTTTTACATTATTAACAAATAATACT
TATAGAATTCTTGTAAGTTCAAATAACTGCATGTAGCCTGGGCTATAACC
TCCATGCTAGATTTAGATTTCCATATAATCACACTCTTCTTACATGGTTA
CTCTTTAGTTTCTCATTGTAAGTTTTTGTTATGTGCATGTGACAGTATAT
ACAAGGCGTAGCGAGATGGATCAGCAGGAAAATTGCCTACTACCCCTTGC
ATGATAACCTGATATACGATTTCCCACACCCACATACCATCCTATTGGCC
TGGCTCACATGTGCATTGTCTG
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCCGTTCAAAAGGAAGTGCAGGAATAAA
GAGTGGAGCAGAGACTGAAGGAAAGGCCATCTAGAGACTGCCCCACCTGG
GGATCCATCCCATCTTCAGACACCAAACCCAGATACTATTGCTGATGCTA
AGAAGCATTTGCTGACAGGAGCCTGGTATAGCTGTCCCCTGAGAGGCTCT
GTCAGAGCCTGACCAATACAGATGCAGATGCATGCAGTCAAACTGGACTG
AGCACGGTGACCCCAATGGAGAAGTTAGTGCAAGGACTGAAGGAGTTGAA
GGGGTCTGCAACCGCATAGGAAGAACAACAATATCAACCAACCAGACCCT
CCAAAAACTCCCAGGGACTAAACCACGAACAAAAGAGTACACATGGGGGC
GGGGGGTGGGGATCATGGCTCCAGCTAGATATGTAGCAGAGGACTGATTT
ATTTGGCATCACTGGGAGGGGAGGCCCTTGGTCCTGTGGAGGCTCCCAAG
GTAGGTGAATGCTAGGGCACTGAGGCATGAGTGGGTGGGCTGGTGGGGGA
GCACTCTCATAGAGACAGGGGCTTTGTGGAGGCGAAGCTGGAAAGGACGA
CAACATTTTGAATGCACCCCCCTACAATACCCATTATCATATATGCGAAA
TTATAACACAGACTACTTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_c17.b1 MSMg01no075_c17.b1 CHROMAT_FILE:
MSMg01no075_c17.b1 PHD_FILE: MSMg01no075_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:46 2005
         (521 letters)



>mm_chr8_85072148_85073068
          Length = 921

 Score =  988 bits (511), Expect = 0.0
 Identities = 517/519 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtctccctgtaagaaatgaaatcattgacaacaaatcaagtagatattagaattgctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtctccctgtaagaaatgaaatcattgacaacaaatcaagtagatattagaattgctt 260

                                                                       
Query: 61  tttatcttcccagagatttatgctgcaaattaatccatatttactttactaaaagtggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatcttcccagagatttatgctgcaaattaatccatatttactttactaaaagtggga 320

                                                                       
Query: 121 acatatgttttgtagttataagaaaatacatttgcatttcataaccaaaaaaagaattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatatgttttgtagttataagaaaatacatttgcatttcataaccaaaaaaagaattat 380

                                                                       
Query: 181 agatatggctaatttcatatataacaatttgaccaaaaatgtattaaacatttatttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatatggctaatttcatatataacaatttgaccaaaaatgtattaaacatttatttcac 440

                                                                       
Query: 241 aatcaaatatatatcattccttcatctacaaataaaacccataaaagaattgggaatgcc 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcaaatatagatcattccttcatctacaaataaaacccataaaagaattgggaatgcc 500

                                                                       
Query: 301 tatcttagcaattgctaacttctaaaacatgctagagagacaagggagatgcttttacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcttagcaattgctaacttctaaaacatgctagagagacaagggagatgcttttacat 560

                                                                       
Query: 361 tattaacaaataatacttatagaattcttgtaagttcaaataactgcatgtagcctgggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattaacaaataatacttatagaattcttgtaagttcaaataactgcatgtagcctgggc 620

                                                                       
Query: 421 tataacctccatgctagatttagatttccatataatcacactcttcttacatggttactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataacctccatgctagatttagatttccatataatcacactcttcttacatggttactc 680

                                                  
Query: 481 tttagtttctcattgtaagtttttgttatgtgcatgtga 519
           |||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 tttagtttctcattgtaagtttttgttatgtgtatgtga 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)