BAC Information

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BAC

Clone NameMSMg01-075F09
Chromosome8 (Build37)
Map Location 85,444,943 - 85,445,483
singlet/doubletsinglet
Overlap geneRnf150
Upstream geneInpp4b, LOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
Downstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075F09.T7 (MSMg01no075_f09.b1)MSMg01-075F09.TJ (MSMg01no075_f09.g1)
ACCAG298178AG298179
length669671
length of high quality
(start - end)
543 (40 - 582)340 (70 - 409)
definitionCHROMAT_FILE: MSMg01no075_f09.b1 PHD_FILE: MSMg01no075_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:58 2005CHROMAT_FILE: MSMg01no075_f09.g1 PHD_FILE: MSMg01no075_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCAGAGATCCGCGGAATCT
CATTGATCATGATACTAGGGATATATACCTAATTGCATATAATCAAACAG
ACTCAACTGACATTGGGGTGAGGGGGAATCGGGATCAGCTTCAGGATTCA
GAAATAACCACAGTGAACATTTTTGGTGATAACCTATTTCCTATCTTATT
TTTAAATATAGTGTATTATGCATAATTACACACATAATTTAATCATGTGA
ATATAATTAGTGTATAATTTTAAATCAAATAAGTCTGTGTTTTGAAAATA
AGAATTAATGTTTGTGGAAGGCATTCCATTACCAGGCTTTGTTCTAAGTG
TCAATCGTTGCAAAATGCATCCCCCAAACTAAGATCAGATACAATGAGAC
AGAATTTACGCCCCAAAAAAGCCCTGTGAGAAAATCCCGGTGAGATAGGA
GCTGTATCTTTCTCCCTTGCACAAGTGAGGAAGCTGAACCATGAGACTGT
TCATTAACTTTGTAAAGGCACATTGCTGGTATTGGACAGTCCCAGTGTGC
TCGTCTTCATTTTCATGGAATTACATATTTACAAATCATCAATTTTTTAA
TGTATAAAATTTTAAGTATACTTTTAAGTATAGAATTCTTATAGATGGAT
TCTCTTTTTTTAAAACCTG
CCCATGATAGGGGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATATTTCTCTTGCTGTCCATGGCTCACAGTT
GGAAGGGAACTGTATATCACGGTAAGAAAGGTGTGGCAGTGGGACCTGCA
GCCAGGATCTCTCACATCTCCTTGGTTCAGCAAGCAGAGAGCAGGAGTGC
TGGGCTTCGACTTGTTTTCCCCTCTTTCCTTTGGTTCAGTCAGGATCTCA
GCCCATGGGGTGGTGCCAGTCCCCTGCAAGGTGTCCCCAGGTTCTGGTCA
AACTTCTCTGGAATCAATCTCACAGACACATCCCAAAGTGTGCCTCGTGA
ATGCTTTTGGTGTCTCCTAATGAAGTCAAGTTGACAATCCCAATCACAGG
TAGGAGGAACCCCCGCCCCGTGGAACATGCAAGACACATGTGTGAAACGC
TGTCTGGCTGGGAGTTTCAGTTTGAATGCTGGTACATGTACACAGGTGGC
CCTGCCCAGGGCAGGGCTGAAAAACACCACCCCTCCCCCCGAGAAAATAT
TCTACCAACGTTCAGCCTCAGGAAAAGCAGATACATAAAGTAGTTAGTTA
GCTTATGATTTTCTGGCAGTCTTTTGAAAACCTTTGTCAACTAATATGGA
CTGTGTGGTACCATATTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_f09.b1 MSMg01no075_f09.b1 CHROMAT_FILE:
MSMg01no075_f09.b1 PHD_FILE: MSMg01no075_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:58 2005
         (543 letters)



>mm_chr8_85444739_85445683
          Length = 945

 Score = 1000 bits (517), Expect = 0.0
 Identities = 535/541 (98%), Gaps = 2/541 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaat-ctcattgatcatg-atactagggatatatacctaattgcatataatcaaacaga 62
           ||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctcattgattatgtatactagggatatatacctaattgcatataatcaaacaga 264

                                                                       
Query: 63  ctcaactgacattggggtgagggggaatcgggatcagcttcaggattcagaaataaccac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaactgacattggggtgagggggaatcgggatcagcttcaggattcagaaataaccac 324

                                                                       
Query: 123 agtgaacatttttggtgataacctatttcctatcttatttttaaatatagtgtattatgc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtgaacatttttggtgataacctatttcctatcttatttttaaatatagtgtattatgc 384

                                                                       
Query: 183 ataattacacacataatttaatcatgtgaatataattagtgtataattttaaatcaaata 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataattacacacataatttaatcatgtgaatataattagtgtataattttaaatcaaata 444

                                                                       
Query: 243 agtctgtgttttgaaaataagaattaatgtttgtggaaggcattccattaccaggctttg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtctgtgttttgaaaataagaattaatgtttgtggaaggcattccattaccaggctttg 504

                                                                       
Query: 303 ttctaagtgtcaatcgttgcaaaatgcatcccccaaactaagatcagatacaatgagaca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctaagtgtcaatcgttgcaaaatgcatcccccaaactaagatcagatacaatgagaca 564

                                                                       
Query: 363 gaatttacgccccaaaaaagccctgtgagaaaatcccggtgagataggagctgtatcttt 422
           ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaatttatgtctcaaaaaagccctgtgagaaaatcccggtgagataggagctgtatcttt 624

                                                                       
Query: 423 ctcccttgcacaagtgaggaagctgaaccatgagactgttcattaactttgtaaaggcac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctcccttgcacaagtgaggaagctgaaccatgagactgttcattaactttgtaaaggcac 684

                                                                       
Query: 483 attgctggtattggacagtcccagtgtgctcgtcttcattttcatggaattacatattta 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attgctggtattggacagtcccagtgtgctcgtcttcattttcatggaattacatattta 744

            
Query: 543 c 543
           |
Sbjct: 745 c 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 945
Length adjustment: 10
Effective length of query: 533
Effective length of database: 935
Effective search space:   498355
Effective search space used:   498355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)