BAC Information

Click to search

BAC

Clone NameMSMg01-075K17
Chromosome8 (Build37)
Map Location 19,754,214 - 19,754,584
singlet/doubletsinglet
Overlap gene4930467E23Rik
Upstream geneMcph1, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730
Downstream geneLOC100041567, LOC547150, LOC100040599, EG665822, 6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075K17.T7 (MSMg01no075_k17.b1)MSMg01-075K17.TJ (MSMg01no075_k17.g1)
ACCAG298430AG298431
length724721
length of high quality
(start - end)
372 (46 - 417)583 (71 - 653)
definitionCHROMAT_FILE: MSMg01no075_k17.b1 PHD_FILE: MSMg01no075_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:23 2005CHROMAT_FILE: MSMg01no075_k17.g1 PHD_FILE: MSMg01no075_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGAAT
TCATAAAATGATTTACCGTAAATAATACAGGCTCCTGGAATTAGGTACAG
TCAACATGGAAGCAACCAATACTTGTGTTTCTCTTCTTAGATCGACTGAC
TTTAAGTGTGTGAATGCTTTGCATGTGTATTCTTTCTGTGTCTCATGTGT
GTGTGTGTGTCCCACAGACATCAGAAGAGGTTATTTCATCTCATGGACTT
GGTGTTCCAGAATTTTGTGAGCAAACGGTTATGTATTACAAATCAAACCC
AGGTGCTATGCAAGAACAAAATATGTTAAAAACTCCTCAACCCCCTTTTC
TAGCTCCTACAGTGAATATGTTTGATATGAAAACGATTAAAAGAATCATA
ATGGGAAGTAAGTAGTCAGCCTTAGGATAATTGTTAACTTCCGGGACCCA
GGCCTCAGCCTTCACATTTTACCTATTGAAGTCCAAAGGACTAATAGGCA
GGGTGTGCACAATAGAGACTCGGTATGCTGGGCACACCTTTAATTCATGA
ACCCACAAATCAGGCAGGATTGTCTTTGTCAGTTCAAGGACACCCTGTTC
ATAATTGATATGGGAAGTAGAGGAAGGCAAGGCGAATTGTGGGTATCATA
TGATTATTATAAGAGTCAGTCTTCTCCTTTCCCCTATTCAGTCTCAGGTA
TCAAGTTCAAGATTGTTGCCATGG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAAGAGGAATCTCAGAAGTTTGAGAAACACCT
GAATGTTCAAAGTCTTCAGTCCTCAGTGAAATGAAAATCAGAAGGACTCG
AAGAATCCACCTTACACCAGTCAGAATGGCTAAAATCAAAACCTGGAGTG
ACAGCACAAGCTGCTAAGAATATTGGGCAAGGGGAACACTCTTCTATTGC
TGGTGGGAGGGCACATGTTTACAACCCCTTTTGAAAAGTAATTTGGGGGA
CACCCCCAAGGAACCACACAGGATTCCCCACGGGATCCTAAGACCTCTGG
TGAGTGGAACACAGTGTCTGCTCCAATCCAATCGCTCGGGACCTGAGACT
GCATTAATTAAGGAAGGAGATAACCCGGCCTGATCAGGGGCACAAGTCCC
TTCCGGTTCACTCCAGCAGTGGAGTTCCTTGTGCGCGGAGTTTCTGGACA
CCCCCAAGGTCCTCACAGGACCCTCCATGGGATCTTAAGACTTCTGATGA
GTGGAACACAACTCCTGCCAGGAGGCAGTTTCGAACACCAGATATCTGGG
CACCTGCCCTGCAAGAGGAGAGCTTGCCTGCAGAGAGTACTCTGACCACT
GAAACTAANGATAGAGCTAGTCTCCCAGATCTGCTGATAGAGGCTAAAAT
AATCACCTGAGGAACAAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_k17.b1 MSMg01no075_k17.b1 CHROMAT_FILE:
MSMg01no075_k17.b1 PHD_FILE: MSMg01no075_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:23 2005
         (372 letters)



>mm_chr8_19754013_19754784
          Length = 772

 Score =  611 bits (316), Expect = e-179
 Identities = 357/376 (94%), Gaps = 10/376 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   gaattcataaaatgatttacc-----gtaaataatacaggctcctggaattaggtacagt 56
           |||||||||||||||     |     |||| |||||||||||||||||||||||||||||
Sbjct: 202 gaattcataaaatga-----caaaaagtaagtaatacaggctcctggaattaggtacagt 256

                                                                       
Query: 57  caacatggaagcaaccaatacttgtgtttctcttcttagatcgactgactttaagtgtgt 116
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 257 caacatggaagcaaccaatacttgtgtttctcttcttaaatcgactgactttaagtgtgt 316

                                                                       
Query: 117 gaatgctttgcatgtgtattctttctgtgtctcatgtgtgtgtgtgtgtcccacagacat 176
           ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 317 gaatgctttgcatgtgtattcttcctgtgtcccatgtgtgtgtgtgtgtcccacagacat 376

                                                                       
Query: 177 cagaagaggttatttcatctcatggacttggtgttccagaattttgtgagcaaacggtta 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 377 cagaagaggttatttcatctcatggacttggtgttccagaattttgtgagcaaacgttta 436

                                                                       
Query: 237 tgtattacaaatcaaacccaggtgctatgcaagaacaaaatatgttaaaaactcctcaac 296
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 437 tgtattacaaatcaaacccaggtgctatgcaagaacaaaacatgttaaaaactcctcaac 496

                                                                       
Query: 297 ccccttttctagctcctacagtgaatatgtttgatatgaaaacgattaaaagaatcataa 356
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 497 ccccttttatagctcctacagtgaatatgtttgatatgaaaacgattaaaagtatcataa 556

                           
Query: 357 tgggaagtaagtagtc 372
            |||||||||||||||
Sbjct: 557 ggggaagtaagtagtc 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)