Query= MSMg01no075_n05.b1 MSMg01no075_n05.b1 CHROMAT_FILE:
MSMg01no075_n05.b1 PHD_FILE: MSMg01no075_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:35 2005
(417 letters)
>mm_chr8_14222233_14223049
Length = 817
Score = 683 bits (353), Expect = 0.0
Identities = 392/405 (96%)
Strand = Plus / Minus
Query: 1 gaaaggggcagggctgctgcttccacattgaagaaacaaggaaggataagtcttgtttct 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 605 gaaaggggcagggctgctgcttccacattgaagaaacaaggaaagataagtcttgtttct 546
Query: 61 agtctttttgcccttctgtggtggcaaggagatttcaccagtttctgtgacagcactgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 agtctttttgcccttctgtggtggcaaggagatttcaccagtttctgtgacagcactgac 486
Query: 121 cgcagcatctcaagtatgacctttgttatctaaactctcaagcatattggttagaatggc 180
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 catagcatgtcaagtatgacctttgttatctaaactctcaagcatattggttagaatggc 426
Query: 181 atttggggacaactccaggttttacagaaaatcactttgatgaccaataactcgccattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atttggggacaactccaggttttacagaaaatcactttgatgaccaataactcgccattg 366
Query: 241 ccggatttgtttctggcataattgattggcataattggatggcacctcctgtctgtttgc 300
|| || || |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 365 ccagaggtgccactggcataatcgattggcataattggatggcacctcctgtctgtttgc 306
Query: 301 tgctgctgggcgacagccctattctccaaagatctgtacaggagtctccatccctttctc 360
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 tgctgctgggtgacagccctattctccaaagatctgtacaggagtctccattcctttctc 246
Query: 361 ttatttgacatgctgaggctatgaatgttttgtcatgtactaggt 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttatttgacatgctgaggctatgaatgttttgtcatgtactaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_n05.g1 MSMg01no075_n05.g1 CHROMAT_FILE:
MSMg01no075_n05.g1 PHD_FILE: MSMg01no075_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:35 2005
(514 letters)
>mm_chr8_14064298_14065211
Length = 914
Score = 870 bits (450), Expect = 0.0
Identities = 498/528 (94%), Gaps = 24/528 (4%)
Strand = Plus / Plus
Query: 1 aaaaagcaaagtattttgttaggagaacaagtcggctctgtgactggtcttcacaagtga 60
||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||
Sbjct: 211 aaaaagcaaagtattttgtcaggagagcaagtcggctctgtgactggtcttgacaagtga 270
Query: 61 gccagctacatttacttagactcacagtaagctagtcaaaatgtaaacttgtgagcttct 120
||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 271 gccagctacattt----------acagtaagctagtcaaaacgtaaacttgtgagcttct 320
Query: 121 gaaaggtgatataaaatataactagttcatggatatgaaatagaaaatataaacagcgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaggtgatataaaatataactagttcatggatatgaaatagaaaatataaacagcgca 380
Query: 181 tataatatactctttactatcataacatgaatcttccaatatttttgtacctagtttctc 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataatataccctttactatcataacatgaatcttccaatatttttgtacctagtttctc 440
Query: 241 cttaattctgtttccatgtctgtagcatgtacagagaaggtggacacattatcctcacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttaattctgtttccatgtctgtagcatgtacagagaaggtggacacattatcctcacac 500
Query: 301 ttagaaaagatgctcacaaacctatacacatgaccgtttacacacacagacatggacacc 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ttagaaaagatgctcacaaacctatacacatgaccatttacacacacagacatggacacc 560
Query: 361 ctttcagaccaacatgtgcgcacaggcactgtaagtcacaggaacatgcagatacacaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcagaccaacatgtgcgcacaggcactgtaagtcacaggaacatgcagatacacaga 620
Query: 421 cataaaaatacacatgttataaatatatat-----atata---------atatcctaact 466
|||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 621 cataaaaatacacatgttataaatatatatttatcatatatatatatatatatcctaact 680
Query: 467 tcatgcaacatataattcacaagtattatatgagcatttaaaattaag 514
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcatgcaacatataattcacaagtattatatgagcatttaaaattaag 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space: 455616
Effective search space used: 455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
