BAC Information

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BAC

Clone NameMSMg01-076A01
Chromosome8 (Build37)
Map Location 42,750,564 - 42,750,929
singlet/doubletsinglet
Overlap genenone
Upstream geneAdam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1, Fgl1, Pcm1, Asah1, Frg1, LOC100039376, Gm1815
Downstream geneLOC671994, Zfp353, EG620772, LOC628212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076A01.T7 (MSMg01no076_a01.b1)MSMg01-076A01.TJ (MSMg01no076_a01.g1)
ACCAG298684AG298685
length814784
length of high quality
(start - end)
245 (108 - 352)366 (131 - 496)
definitionCHROMAT_FILE: MSMg01no076_a01.b1 PHD_FILE: MSMg01no076_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:49 2005CHROMAT_FILE: MSMg01no076_a01.g1 PHD_FILE: MSMg01no076_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACAACCTCCACANNTNNTTCTTTTCCTCTCGCACCCCCCCCANCGGGAG
CTTNTCCCCATACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCATAAAAAAGGACCGATACTTTAAAAATTGGTAT
TTTTAAGATGATCTGGAGTCATCAATTATGCTGCTGTTGGCTTAGATTTT
TCAAAACCTACTGTAATTATTATTATTTTGTAAAGCTTCAGCCTCCCTTC
TAGTCTAAAACTCACCAGAGGTATGGGAAAAGAAAGGTAAAATGAAACAG
GGGTTGTGGAACTATTTTGTTCTTTGGAGCAATTCCAGTCTTTGTGGTCA
GCAGTCCAGTCCACTAGCAAAACACCAAACATGGATTCATCAGCAGCAGC
TCAGCTCACTCAGCATACATCATACACAGAATCAGTTATCAGTGAATTAG
TAGCAGCAGTTTCTTCTCATTCCTGAAGAAACTCCGAGGCTCCGCTGATC
AACCCAAGTCCATGGATGATGCTTGATGTATTCTAAATACCTTTCTAAAG
TTCTTTGGTGCATCCCTTTTCATAAACGTCTTGTACAGGTTAAGACCTTC
CCATTCTTGCACGATATTACCCTACTAGCGCTTTTGTCCAGCGGAAGGTT
AACTCCCATTGGATTCCCTTTTTATGAACCCTTCACAGAACACTGCAAAG
TGAAACCCATGCCACTCGGGCTCGCCCTCTGGCTCCGGTGCTTTTATTAC
ACAAAACCCCTTTAATAAAAATATCCAGCTCCATTCTTAGGTGGCTGTGC
CCGGCCCCTTTACT
NNNNNNNNNNNNNNTTTTNNNCCCCCCCCCCCTNCCCTTTCTNNTTTTTC
CTTTTTCGATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGGAGGTCAGCTGCAAC
TTTCATACAGCCAACCTAGCCATGAAGTGAATATTGGGTTATTGCAAGCA
TATCTTTATTCAAAGCCAAGAGAATTCTCTTACTTCTTAATAATTACACT
ATTTTATTTTATCAGATAAATTCTACTCTTTGATTCCTTAAAACAAATTC
TGCAATACTTTGTAGGTGAGATTCTACATTTGCATAATTAGTTCTTTGAA
GTTGAACTGCCAGGCTGCAAAAATCATTAAACTGATTTTCATTGAACTCT
AACCGTCATGGGGAATAATATCTTTCTTCTTACAGAAGTATCCTTTTCCT
GGAAATGTACTTCCCGGCTTTATTTCCTTTGCTAATTGATCCTGGTCATT
TAATTCAACACCTTTTATAACGTTAAAATTATAAAGATTTAATTGACTTT
TGCTTACCTTCCCATTATGCTTAAACTTGCTTCCAATCCATCCCCATAAA
ATCCCATTACACGTTAGATATATTGCAATTACCCCCAATAATTCCGCTCA
TTTCTTAAAAAAAGGACCCCGCCCTCTGGTCTTTTTCGGCAATTTTTCCG
CCCGGCTTGAGTAAGGCTTTTTTAATTTAACTAAATCAACAGGGCTCCCT
TTCACGGAACACCTAACTGTCGGGCCTCCACCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_a01.g1 MSMg01no076_a01.g1 CHROMAT_FILE:
MSMg01no076_a01.g1 PHD_FILE: MSMg01no076_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:49 2005
         (366 letters)



>mm_chr8_42750364_42751129
          Length = 766

 Score =  708 bits (366), Expect = 0.0
 Identities = 366/366 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacaggaggtcagctgcaactttcatacagccaacctagccatgaagtgaatattgggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tacaggaggtcagctgcaactttcatacagccaacctagccatgaagtgaatattgggtt 507

                                                                       
Query: 61  attgcaagcatatctttattcaaagccaagagaattctcttacttcttaataattacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attgcaagcatatctttattcaaagccaagagaattctcttacttcttaataattacact 447

                                                                       
Query: 121 attttattttatcagataaattctactctttgattccttaaaacaaattctgcaatactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attttattttatcagataaattctactctttgattccttaaaacaaattctgcaatactt 387

                                                                       
Query: 181 tgtaggtgagattctacatttgcataattagttctttgaagttgaactgccaggctgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtaggtgagattctacatttgcataattagttctttgaagttgaactgccaggctgcaa 327

                                                                       
Query: 241 aaatcattaaactgattttcattgaactctaaccgtcatggggaataatatctttcttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaatcattaaactgattttcattgaactctaaccgtcatggggaataatatctttcttct 267

                                                                       
Query: 301 tacagaagtatccttttcctggaaatgtacttcccggctttatttcctttgctaattgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tacagaagtatccttttcctggaaatgtacttcccggctttatttcctttgctaattgat 207

                 
Query: 361 cctggt 366
           ||||||
Sbjct: 206 cctggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)