BAC Information

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BAC

Clone NameMSMg01-076I20
Chromosome8 (Build37)
Map Location 65,771,390 - 65,771,927
singlet/doubletsinglet
Overlap geneSpock3
Upstream geneLOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495, Tll1, LOC100040989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076I20.T7 (MSMg01no076_i20.b1)MSMg01-076I20.TJ (MSMg01no076_i20.g1)
ACCAG299102AG299103
length799691
length of high quality
(start - end)
---528 (73 - 600)
definitionCHROMAT_FILE: MSMg01no076_i20.b1 PHD_FILE: MSMg01no076_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:34 2005CHROMAT_FILE: MSMg01no076_i20.g1 PHD_FILE: MSMg01no076_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTACGTACTCCCTCTGTGGATGTAGTGAAGAGTATTTAG
AATGCAGTTGAAAATGATGGGGTTTTCATTCATGTTCCGTGGCCATGTAT
ATATATATCTATGTGCGTGCCTCGTCTCCGCGCGCGCGCCACTCCATCCA
CCACCCCTCTCCCCTCCCCCCTCCCTTCCCCCTTCCCCTCTCTCCTCCCC
CCCCTCCCCCCCCCCCCCCCCCTCTCCCCCCCTCCCTCCCTCCTCCCCTC
CTTCCCCCCTCCCCTCCCCCCTCTCCCCCCCCTCCCCTCCCCCCTTTCTC
CCCCCCTCCCCCCCCCCCCTCCCCCCCTCCCCCCCTCTTCCCTCCCACCC
CTTCCTCCCCTTTCTCTCCCCCCCCCCCCCCCCTTCCTCTCTTCTCCCCT
CTTCCCCCTCCCCTCTCCTTCCCCCCTCCCCTTCCTCTCCTCTCCCCCCT
CCTCCACCCCTCCTCTTCCCTCCCCCTTTCTCCCCCTTCTTCTCCTTCCT
CTCTCCCCTTCTCCCCCCTCTCTCCCTCCCCTCTTTCTTCTCCTCCTCCT
CCCCCTCTACCCTCTCCACCTTCCCCTCCCCTCCCTCCTCCCCCTCCTCC
TCCCCCCCCCTCCCTCCCCCCTCTCCTCTTCCTTCCCCCACCTTCCCTCC
CACCCATCCCTCCCTCTCCCTCCCCCCACCCCCCCCTTCTCCCCTCCCTC
CTATCCCTTCCCCCCTTCCCCCCTCCCTCCCCTCCTCCCTTTCCTTTCC
CAATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATTCAGGAACCTGCCAAGAACTGCTTT
TACTCTTACCAATATTAATGGAACTCATGGCTGCTATTGAAATCAATTTC
AGTAGCCATTAAAAGAATTACCATGAAGTAAAAAATGAAGACATAAGCTC
AAAGGTGTGTGCATTTGGCAATCATTTGAAATAATAAAAAGCTGACTTGC
TTTGTAAGAACAACATATGAGAGCGGAAACAATGAATGGACTTTGAAGTT
CATAAAGTATTCTAATCAGAGGAACCTTGGCATTGATAATTTCCTGACTT
AAGTCATGACATTTCTGAAAAAATAACTTGTACCACCTGACACTGTATTA
GACCCTGTAAAAATTGTAAAAAGCATTCTACTACTAGATTCATGGTAATT
GAGATCCATAAAAAGGAAAGACATTTTTTCTTTTATTGGATATTTTCTTT
ATTTACATTTCAAATGTTATTCCCTTTCCTGGTTTTCCCTCTGGAAACCC
CTATCTTAACGATCCTTTGTTACATATGCTGCTGACACCCTCTTTGGTTG
GTGGGTTAGTCTATGGGAGTTCTGGGGGGTCTGATTGGTTGATATTGTTG
TTCTTCCTATGCCCCTGCAAACCCCTTCCGCTTCTTCTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_i20.g1 MSMg01no076_i20.g1 CHROMAT_FILE:
MSMg01no076_i20.g1 PHD_FILE: MSMg01no076_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:34 2005
         (528 letters)



>mm_chr8_65771078_65772005
          Length = 928

 Score =  886 bits (458), Expect = 0.0
 Identities = 514/538 (95%), Gaps = 12/538 (2%)
 Strand = Plus / Minus

                                                                       
Query: 3   ttcaggaacctgccaagaactgcttttactcttac-caatattaatggaactcatggc-t 60
           |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 850 ttcaagaacctgccaagaactgcttttactcttacacaatattaatggaactcatggctt 791

                                                                       
Query: 61  gctattgaaatcaatttcagtagccattaaaagaattaccatgaagtaaaaaatgaagac 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 actattgaaatcaatttcagtagccattaaaagaattaccatgaagtaaaaaatgaagac 731

                                                                       
Query: 121 ataagctcaaaggtgtgtgcatttggcaatcatttgaaataataaaaagctgacttgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ataagctcaaaggtgtgtgcatttggcaatcatttgaaataataaaaagctgacttgctt 671

                                                                       
Query: 181 tgtaagaacaacatatgagagcggaaacaatgaatggactttgaagttcataaagtattc 240
           |||||||||||||||| ||| ||||||||||  |||||||||||||||||||||||||||
Sbjct: 670 tgtaagaacaacatataagaccggaaacaatttatggactttgaagttcataaagtattc 611

                                                                       
Query: 241 ta---------atcagaggaaccttggcattgataatttcctgacttaagtcatgacatt 291
           ||         ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 610 taattatatacatcagaggaaccttgacattgataatttcctgacttaagtcatgacatt 551

                                                                       
Query: 292 tctgaaaaaataacttgtaccacctgacactgtattagaccctgtaaaaattgtaaaaag 351
           ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 550 tctaaaaaaataacttgtaccacctgacactgcattagaccctgtaaaaattgtaaaaag 491

                                                                       
Query: 352 cattctactactagattcatggtaattgagatccataaaaaggaaagaca-ttttttctt 410
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 490 cattctactactagattcatggtaattgagatccataaaaaggaaagaaatttttttctt 431

                                                                       
Query: 411 ttattggatattttctttatttacatttcaaatgttattccctttcctggttttccctct 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttattggatattttctttatttacatttcaaatgttattccctttcctggttttccctct 371

                                                                     
Query: 471 ggaaacccctatcttaacgatcctttgttacatatgctgctgacaccctctttggttg 528
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggaaatccctatcttaatgatcctttgttacatatgctgctgacaccctctttggttg 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)