BAC Information

Click to search

BAC

Clone NameMSMg01-076K12
Chromosome8 (Build37)
Map Location 112,281,578 - 112,281,785
singlet/doubletsinglet
Overlap genenone
Upstream geneAtbf1, 4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089
Downstream geneLOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076K12.T7 (MSMg01no076_k12.b1)MSMg01-076K12.TJ (MSMg01no076_k12.g1)
ACCAG299180AG299181
length784728
length of high quality
(start - end)
214 (41 - 254)465 (74 - 538)
definitionCHROMAT_FILE: MSMg01no076_k12.b1 PHD_FILE: MSMg01no076_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:43 2005CHROMAT_FILE: MSMg01no076_k12.g1 PHD_FILE: MSMg01no076_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTCAGAGGATCCGCGGAAT
TCTTGCTGAGTGCCGGTGGTGGTGCATGCCCCTGCCTCCGCAGTGCTAGG
TTTAAAAACATCCACCATCACAGTCAGCTTCCACGAGGTGTCTTTAAAGT
CAGGAAAAGAAGGTTTCAGAATTCTGTGTTTTTCTTAGAGAACTGGATTC
TGGTTTGGACTGAATCCAGATTTGGACTAATCTGGGCAGCTGCTAGGCCT
GAGGAGTCTGAGGTGGAAAGAGTAAGCTAAATCAGTTTGAACTCTCTGAG
GAGGGCGTCCCTATGTTGACTTGTTTCCAATACACTTTGCCTACATCCTT
TTCTCTCTCACAAAGGGTACACTTTTTCTTGTGCGCCTTTGTCACTCTGT
TTCTTACATCTATTCCCACCCCCTCACCTTTTTTTTGCACACCTTTTATC
TTACTTCTTCTCTTGCTTCTATATTCCCCTGATATTTCTCTCCTTCTCCT
CTCCTTCTATCCACCTCTTCTTCTCCTATCATTTTCCTCTTTTTCCCCTG
TCTATCTGTTCCCGCCTTTAATCGCCTCCTCCTCCTCCATATCCGTTTCT
CCCTGCACTTTCTCTATACTTTACCCTCCGTTTTCATCTCCGCTTCCTCT
TTCCCTTTCCTTTTCTTCACTCCTTTTTCCGTTTATACTGTTTCTTCTGT
GCGCGACTCCTTCTACCTCCTTCCCCCCTCCTTGCTTGCCTTTCTCTCCG
CTGCTCCTGTCCCGCACTTCTTCTCTTCTTTTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAACATTGACTACATAAAGAACCCAGT
TCAGTCACAGTCAGGAAAGGAACATGCTGTTATTTCACCTCAGGGATTTT
AGTATTTGTTTTATTTACTTCATTTTGTATATCTGGGTATGTGCATTTGG
GAACTGGAGCCCCAGAGGCCCGAAGAAGGAGTTACTGGTGGTTGGTTTTG
ACTCAACCACTGTATATATGTGCTACAAACCAAGGTCAGATCCCCGGTAA
AAAGAGCATATGCTCTTAACCTCTGAGCCATTCCTGCAGGCCTCAGCTTA
GGTTTGTTTTGGTTTTTTTGTATTTTTTTTTAAAGATAGATTTATTTATT
ATAAGTGAATACACTGTACCTGTCTTCAGACACACCAGAAGAGGGCATCA
GATCTCATTACAGACAGTCCTGAGCCACCATGTGGCTACTGGGATTTGAA
CTCAGGACCTTCAGAAGAGGAGTCAGTGCTCTTAACGGCTGAACCATCTT
TTCAGCCCCAAGCTTGTGTTTTTAAAAACAAGTTTTATAGCAACAGATGA
GTTCAAACTGGTCCTACTTTTTCTTCCGATTGATTTTCAACTATCACCTA
TTCTCCCTCCCCAAATCACCAAAGGATTTTATCTGCATTTTCTTTCTCCT
GGTACGCAGGTATACACTTGCGTGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_k12.b1 MSMg01no076_k12.b1 CHROMAT_FILE:
MSMg01no076_k12.b1 PHD_FILE: MSMg01no076_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:43 2005
         (214 letters)



>mm_chr8_112281372_112281985
          Length = 614

 Score =  379 bits (196), Expect = e-110
 Identities = 205/208 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttgctgagtgccggtggtggtgcatgcccctgcctccgcagtgctaggtttaaa 66
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcttgctgagcggcggtggtggtgcatgcccctgcctccgcagtgctaggtttaaa 266

                                                                       
Query: 67  aacatccaccatcacagtcagcttccacgaggtgtctttaaagtcaggaaaagaaggttt 126
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 267 aacatccaccatcacagtcagcttccatgaggtgtctttaaagtcaggaaaagaaggttt 326

                                                                       
Query: 127 cagaattctgtgtttttcttagagaactggattctggtttggactgaatccagatttgga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagaattctgtgtttttcttagagaactggattctggtttggactgaatccagatttgga 386

                                       
Query: 187 ctaatctgggcagctgctaggcctgagg 214
           ||||||||||||||||||||||||||||
Sbjct: 387 ctaatctgggcagctgctaggcctgagg 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)