BAC Information

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BAC

Clone NameMSMg01-078B24
Chromosome8 (Build37)
Map Location 53,017,644 - 53,018,084
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517, LOC623872
Downstream geneLOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078B24.T7 (MSMg01no078_b24.b1)MSMg01-078B24.TJ (MSMg01no078_b24.g1)
ACCAG299535AG299536
length710696
length of high quality
(start - end)
---441 (72 - 512)
definitionCHROMAT_FILE: MSMg01no078_b24.b1 PHD_FILE: MSMg01no078_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:21 2005CHROMAT_FILE: MSMg01no078_b24.g1 PHD_FILE: MSMg01no078_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAAATTTGCGGCGCTAAACGACTACTATTTTCAGAGGATCCGCGGAATT
CTTTGTTCTTCTCCGAGCTCCATTTTTTAATGGAGATGTTTGATTTTCTG
GAGTCCAGCTTCTTGTAGCCTTTATGTCTGCGCATATTAGTCCCCTATCT
CATTTAGGATACGTAAAGACTCTTTCCCAATCTGTGGTCATTTAGTCTTG
TTAACGGTGTCTGTCGCCTTGCACACATTTTGCAACATTATGAGGCACCT
TTTATCAATTCCTGATCTTACAGCACAAGCCATTGCTCTTCCATTCAGCA
ATTTTTCCCCTCGTCACTTTATACTTTACGATTTTCCCTACTTTCTCCCT
CTATAAGCTTTAGTGTCTCCGGTTTCATGTGGAGCCCCTTAACCCCCCTA
GATTTTGACCCTTACCTCCACGCCCTAGTAATGGATCCAATTCACATCTT
CTTCTACCCTGATATTCGTCACTCGTGATATTCCCTCTTGTTGAAAAGGT
CGCCCTCTTTGCCAGCTGGCATGATTTAATCTTCCCTGTTCAATACCAAG
GGACCCTACGGCGAGTGATTCCTCTTCTTAATCACTAAATCCGTTCCCAT
TCTGTCTACCGTTCTGTTGCTATCTCCCGTATCCTGTCATTTTTTATAAC
CACTGGCTTTGTTGCTATAGGTTTTTGTACGTCTTTCCCGCGTCATTCCC
CTCTCCACTT
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTGTATATTGGATATTAGCCCTCTAT
TGGATGTAGGGTTGATAAGAATCTTTCCCCAATCTGTTGGTTGCTGTTTA
TTGTTGAGTACTGATATACTATAAGCAAAACTTCTCTGTATGGTACTATA
CTAGAAAATTACACACATACTTATGGCTGTGCATACAAAAGCATTTCAAT
ATTTACTACAGCTCCATAAATAAATTTTCATTCTGCTTGTCGATTATAAA
TAATCAAATAGATGATGATAATGTAACAAATACAAGCAATTTCTATCTAT
AAATTTTAAATAATCCCGAACTTCTGTGAAGAAGTTTGACTTATTCTATT
TTATAATTATCATTTTATGAAAATATATACAATATATTTTTCTTATAGTC
TTTCCTCTCCTTAACTTATTCCAGATCCTTTTCACCTTCATATTCATCAA
AAAGTTGAAAATTATTCAGGAGTATTTATCCCTTCAGAGAAGATACCATT
GGAATAGATTTTGAGGGGACAGAAAGCTGAAAAGAAATGTTGGAGGAATT
ATGGGCAGGTGCAAGTCATTAATCAGATTACCATGCGTCAAATTTTAACA
ACAATACCATTGAAAGATCGGATATACACTCGGAAAATTTCATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_b24.g1 MSMg01no078_b24.g1 CHROMAT_FILE:
MSMg01no078_b24.g1 PHD_FILE: MSMg01no078_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:21 2005
         (441 letters)



>mm_chr8_53017444_53018284
          Length = 841

 Score =  822 bits (425), Expect = 0.0
 Identities = 437/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtgtatattggatattagccctctattggatgtagggttgataagaatctttcccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tttgtgtatattggatattagccctctattggatgtagggttgataagaatcttttccca 260

                                                                       
Query: 61  atctgttggttgctgtttattgttgagtactgatatactataagcaaaacttctctgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgttggttgctgtttattgttgagtactgatatactataagcaaaacttctctgtat 320

                                                                       
Query: 121 ggtactatactagaaaattacacacatacttatggctgtgcatacaaaagcatttcaata 180
           |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 321 ggtactatactagaaaattacatacattcttatggctgtgcatacaaaagcatttcaata 380

                                                                       
Query: 181 tttactacagctccataaataaattttcattctgcttgtcgattataaataatcaaatag 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttactacatctccataaataaattttcattctgcttgtcgattataaataatcaaatag 440

                                                                       
Query: 241 atgatgataatgtaacaaatacaagcaatttctatctataaattttaaataatcccgaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgatgataatgtaacaaatacaagcaatttctatctataaattttaaataatcccgaac 500

                                                                       
Query: 301 ttctgtgaagaagtttgacttattctattttataattatcattttatgaaaatatataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgtgaagaagtttgacttattctattttataattatcattttatgaaaatatataca 560

                                                                       
Query: 361 atatatttttcttatagtctttcctctccttaacttattccagatccttttcaccttcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatatttttcttatagtctttcctctccttaacttattccagatccttttcaccttcat 620

                                
Query: 421 attcatcaaaaagttgaaaat 441
           |||||||||||||||||||||
Sbjct: 621 attcatcaaaaagttgaaaat 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)