BAC Information

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BAC

Clone NameMSMg01-078G18
Chromosome8 (Build37)
Map Location 108,816,601 - 108,817,156
singlet/doubletsinglet
Overlap geneSmpd3
Upstream geneExoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078G18.T7 (MSMg01no078_g18.b1)MSMg01-078G18.TJ (MSMg01no078_g18.g1)
ACCAG299762AG299763
length677677
length of high quality
(start - end)		231 (84 - 314)556 (75 - 630)
definitionCHROMAT_FILE: MSMg01no078_g18.b1 PHD_FILE: MSMg01no078_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:44 2005CHROMAT_FILE: MSMg01no078_g18.g1 PHD_FILE: MSMg01no078_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCCATCTATAATTGCGGCGGTAAACGAATCACTTCGTAGTGGGGCG
CGGAATCAACTTTACANTACCATGGNNGGTCAAACCACCTGTAATGGAAT
CTGATGCCCTCTTCTGGTGCATCTGAAGACAACTACAGTGTGCTTATTTA
AATAATAAGTAAATCTTTGGGCCAGAGTGAACAGGGTTGACCAAAGCAAG
CAGAGGTCCTAAATTCAATTCCCAACAACCATATGAAGGCTCACAACTAT
CTGTACAGCTACACCGTGTACTCAGATACATAAAATAAATAAATCTTTTT
TTAAAAAGAGAATTGAGTAGGTAGTTTTTGCGAGTTGGAGACCAGCCTGT
GAGTTCTAAGGCCACTAGGGCTATGTAGAAAGACTTTGTCTCAATTAACC
AAGCCAAAAAATATTGAGACAGCAAAAAAATTCCGATACCTGCTAAATAT
TTTAGAATTTATTTCTGTCTTTAGCTTGAGAAGGCACATTGATCGGGTTT
CAATAAGTTAACAAAAAATATTTTTGATACATTCTAATGGTAGCTCAATC
TATCCTTGACCTTCTGATCTTCCCACGTCCAGCCTAAATATTTCTCCCAT
ATTCTCTCCCTCCCATCTGCCAATCCAGTTACACACAGGGATGTCTCTAT
TATGTAACTCTGGCTGTACTAGAACTC

NAACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACTCGCTCCCATCCCAGTCGCCAGA
TGTGCTGCAGGGCGTGCCTAGCAACCAGTGTTACTCATTCCAGCTGTACG
CCCTGCGCCTTCATTCACAAGCAGAGCCAAGTGGTGACTGCTACAAAGAT
GTGCTGTGTGTGGAACACGAGGCAGAAGGGCAAGGAGACCCAAATGTGAC
CCCTTCTGCCTCTCCTATCCTCACTTCTACTTTAAAGCTAGATGAGGAGC
CAAGCAGCAGAAGAAGTCTTTCGGTTTCATCTGGGGAGGCGCGGCCTCAC
ACTTCAGCTGGCCAGGCCTGCTTTGAATCCTGAAGTGACCCTCCAATGCC
TTTACCTGAGGGACACGTCTCCCGCTTTGGCATTTGAATTCAAGCCTGAA
AACGCAGAGAAGCAGGCAGTGGTTTGGACAGAGGAGGCCCAGGGTTTGCT
TTCCTTGTCCGGAGCCAACTACAGACTCAAGTTTCTCAAACGTTTGAATC
AACAGAGAGACCGTTTACCAATATCTTAAAAAAGAAATGTAAATTAGAGG
TTGGTGAACCCCCAGTGTTCCTGACCACAGATGTCAAAGGCTTCCTTGAC
TGGGAGGGACAAAATGAAAAGCAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_g18.g1 MSMg01no078_g18.g1 CHROMAT_FILE:
MSMg01no078_g18.g1 PHD_FILE: MSMg01no078_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:44 2005
         (556 letters)



>mm_chr8_108816401_108817356
          Length = 956

 Score = 1013 bits (524), Expect = 0.0
 Identities = 548/556 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactcgctcccatcccagtcgccagatgtgctgcagggcgtgcctagcaaccagtgttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tactcgctcccatcccagtcgccagatgtgctgcagggcgtgcctagcaaccagtgttac 697

                                                                       
Query: 61  tcattccagctgtacgccctgcgccttcattcacaagcagagccaagtggtgactgctac 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tcattccagctgtaggccctgcgccttcattcacaagcagagccaagtggtgactgctac 637

                                                                       
Query: 121 aaagatgtgctgtgtgtggaacacgaggcagaagggcaaggagacccaaatgtgacccct 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 636 aaagatgtgctgtgtgtggaacacgaggcagaagggcaaggagactcaaatgtgacccct 577

                                                                       
Query: 181 tctgcctctcctatcctcacttctactttaaagctagatgaggagccaagcagcagaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tctgcctctcctatcctcacttctactttaaagctagatgaggagccaagcagcagaaga 517

                                                                       
Query: 241 agtctttcggtttcatctggggaggcgcggcctcacacttcagctggccaggcctgcttt 300
           ||||   |||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct: 516 agtcagccggtttcatctggggaggtgtggcctcacgcttcagctggccaggcctgcttt 457

                                                                       
Query: 301 gaatcctgaagtgaccctccaatgcctttacctgagggacacgtctcccgctttggcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaatcctgaagtgaccctccaatgcctttacctgagggacacgtctcccgctttggcatt 397

                                                                       
Query: 361 tgaattcaagcctgaaaacgcagagaagcaggcagtggtttggacagaggaggcccaggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgaattcaagcctgaaaacgcagagaagcaggcagtggtttggacagaggaggcccaggg 337

                                                                       
Query: 421 tttgctttccttgtccggagccaactacagactcaagtttctcaaacgtttgaatcaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tttgctttccttgtccggagccaactacagactcaagtttctcaaacgtttgaatcaaca 277

                                                                       
Query: 481 gagagaccgtttaccaatatcttaaaaaagaaatgtaaattagaggttggtgaaccccca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gagagaccgtttaccaatatcttaaaaaagaaatgtaaattagaggttggtgaaccccca 217

                           
Query: 541 gtgttcctgaccacag 556
           ||||||||||||||||
Sbjct: 216 gtgttcctgaccacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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