Query= MSMg01no078_h19.b1 MSMg01no078_h19.b1 CHROMAT_FILE:
MSMg01no078_h19.b1 PHD_FILE: MSMg01no078_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:49 2005
(615 letters)
>mm_chr8_65466141_65467155
Length = 1015
Score = 1158 bits (599), Expect = 0.0
Identities = 608/611 (99%)
Strand = Plus / Minus
Query: 5 gaattccataaccaccttaagtctaaagtctgacacagtgtatatatgagccactgggag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gaattccataaccaccttaagtctaaagtctgacacagtgtatatatgagccactgggag 756
Query: 65 caaaatatttgctcattttttatatggatacttaaattggtagggctagtccccagacct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 caaaatatttgctcattttttatatggatacttaaattggtagggctagtccccagacct 696
Query: 125 caaatgagagggaaggcaagggtcagtttatccaccagtttatcatctgatacaggattc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 caaatgagagggaaggcaagggtcagtttatccaccagtttatcatctgatacaggattc 636
Query: 185 aacttagagacacttccaccaagggcacaaatacatgtgccattcagtgagttcctgcat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aacttagagacacttccaccaagggcacaaatacatgtgccattcagtgagttcctgcat 576
Query: 245 gtatcaggaccattactacaccacaatttcttaaagaaaatgcttgtgtaaaggccttta 304
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 575 gtatcaggaccattactacaccacaatttcaaaaagaaaatgcttgtgtaaaggccttta 516
Query: 305 cagcattgatgtgtatgggacctgttatctaaagcacattttctatgacaccctgagatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cagcattgatgtgtatgggacctgttatctaaagcacattttctatgacaccctgagatt 456
Query: 365 tcattctaaacagtgaagatctaaatatacactctttatcctggactgtgttaaaattta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tcattctaaacagtgaagatctaaatatacactctttatcctggactgtgttaaaattta 396
Query: 425 ttgctatactgtacggatcccagtattaagtacaaacaccttaatcccagattgagatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttgctatactgtacggatcccagtattaagtacaaacaccttaatcccagattgagatat 336
Query: 485 aaactatgttctgattactataataagttcctatttatctgccttttgaataccaactcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaactatgttctgattactataataagttcctatttatctgccttttgaataccaactcc 276
Query: 545 caaataaattataaattgccttatacctttttgccatgcttagcacatgttatattgaat 604
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 caaataaattataaatcgccttatacctttttgccatgcttagcacatgttatattgaat 216
Query: 605 atcatgtacat 615
|||||||||||
Sbjct: 215 atcatgtacat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_h19.g1 MSMg01no078_h19.g1 CHROMAT_FILE:
MSMg01no078_h19.g1 PHD_FILE: MSMg01no078_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:49 2005
(482 letters)
>mm_chr8_65313455_65314341
Length = 887
Score = 864 bits (447), Expect = 0.0
Identities = 476/489 (97%), Gaps = 7/489 (1%)
Strand = Plus / Plus
Query: 1 ttactc--ttttttttaaattttatgtctctgagtatatttgtgtgtgaatatgtgactg 58
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttactctttttttttttaattttatgtctctgagtatatttgtgtgtgaatatgtgactg 258
Query: 59 cagttgtaggtgaggccagagatagttgtagggccccttggagctagacttacagagaga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cagttgtaggtgaggccagagatagttgtagggccccttggagctagacttacagagaga 318
Query: 119 tatgagctggccaatgtatgtgctagcaataacacctaggcagtttgtaaaatcagtaag 178
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 319 tatgagctggccaatgtatgtgctagcaataacacccaggcagtttgtaaaatcagtaag 378
Query: 179 cagtctcaatggttgcaccatctcttcaacctataaagcatatattctttatc-----gt 233
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 379 cagtctcaatggttgcaccatctcttcaacctataaagcatatattctttatcgttatgt 438
Query: 234 tttcttctactaatcggaaattcttgattagtttttcgtatttgtctttgggaaattctt 293
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 439 tttcttctactaattggaaattcttgattagtttttcgtatttgtctttgggaaattcct 498
Query: 294 tgtgttatacccttcatactttggatatgtctcactgtaacagtacatgcttaattgaga 353
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 tgtgttatacccttcatactttggatatgtctcactgtaacagtacatgtttaattgaga 558
Query: 354 tgtcttcttacttcccttcaacaaatgttatgcataaaatcataaaaagtactagggcat 413
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 559 tgtcttcttacttcccttcaacaaattttatgcataaaatcataaaaagtactagggcat 618
Query: 414 gatgatgaaagtgtgagaggaggtactaataaaaaatcagaggaggtggggagagggaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gatgatgaaagtgtgagaggaggtactaataaaaaatcagaggaggtggggagagggaaa 678
Query: 474 ggaaaacat 482
|||||||||
Sbjct: 679 ggaaaacat 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 887
Length adjustment: 10
Effective length of query: 472
Effective length of database: 877
Effective search space: 413944
Effective search space used: 413944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
