Query= MSMg01no078_k03.b1 MSMg01no078_k03.b1 CHROMAT_FILE:
MSMg01no078_k03.b1 PHD_FILE: MSMg01no078_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:01 2005
(236 letters)
>mm_chr8_94391368_94392003
Length = 636
Score = 422 bits (218), Expect = e-122
Identities = 227/230 (98%), Gaps = 2/230 (0%)
Strand = Plus / Plus
Query: 6 gaattctcttttcacgagcctcttatgtggaggaaactctatgtctctgaccccagcagg 65
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctcttttcaggagcctcttatgtggaggaaactctatgtctctgaccccagcagg 265
Query: 66 attgctggtttggatcccaggacaaaagacaaaagccactaaggtgaccttcactcctgg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attgctggtttggatcccaggacaaaagacaaaagccactaaggtgaccttcactcctgg 325
Query: 126 tgcactgtctggaggaactctctagtctctctctctctctctctctctctctctctctct 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgcactgtctggaggaactctctagtctctctctctctctctctctctctctctctctct 385
Query: 186 ctctctctctctctctctctctctctctctctctccctactcctgtctta 235
||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 386 ctctctctctctctctctctctctctctctctc-ccc-actcctgtctta 433
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 42
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no078_k03.g1 MSMg01no078_k03.g1 CHROMAT_FILE:
MSMg01no078_k03.g1 PHD_FILE: MSMg01no078_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:01 2005
(559 letters)
>mm_chr8_94521191_94522149
Length = 959
Score = 1081 bits (559), Expect = 0.0
Identities = 559/559 (100%)
Strand = Plus / Minus
Query: 1 caaaccatccaggcattcctaataaggcccatgtagtaggggatttaaaacacttaaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 caaaccatccaggcattcctaataaggcccatgtagtaggggatttaaaacacttaaact 700
Query: 61 tgttcagaggaagaaagagactccaaagcaagagtttgcccccagaacctccctacctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tgttcagaggaagaaagagactccaaagcaagagtttgcccccagaacctccctacctgt 640
Query: 121 tccagtcaagtgtctggtggcaggaagggcaggctagtggtcagcccttgtccaaagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tccagtcaagtgtctggtggcaggaagggcaggctagtggtcagcccttgtccaaagcat 580
Query: 181 gcaatagccttaaaatacctcctaggacaggtgcagctgtgaggtcgctcagaactagct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gcaatagccttaaaatacctcctaggacaggtgcagctgtgaggtcgctcagaactagct 520
Query: 241 tgtcgtcacaccccgaagacacacaacaccaggacaacatcgtgttaggctccttgtaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgtcgtcacaccccgaagacacacaacaccaggacaacatcgtgttaggctccttgtaag 460
Query: 301 caaagtaggagcagaggaagcaccctctcacaaggaaaacattgatccgaagagcctcgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caaagtaggagcagaggaagcaccctctcacaaggaaaacattgatccgaagagcctcgg 400
Query: 361 acagggctggggcctcctcgagcaaggaagggaggaaaggccttcttcggctgacacaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acagggctggggcctcctcgagcaaggaagggaggaaaggccttcttcggctgacacaat 340
Query: 421 aaattagttcaaagccgatgacagcccggaagattgcccaccacctgacaaaggagggaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaattagttcaaagccgatgacagcccggaagattgcccaccacctgacaaaggagggaa 280
Query: 481 cgctccggtccccttcacgaaacatagataaaaattgtgttcttctcctctaatgaggca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cgctccggtccccttcacgaaacatagataaaaattgtgttcttctcctctaatgaggca 220
Query: 541 agctcagatctaagtcaat 559
|||||||||||||||||||
Sbjct: 219 agctcagatctaagtcaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
