Query= MSMg01no078_k04.b1 MSMg01no078_k04.b1 CHROMAT_FILE:
MSMg01no078_k04.b1 PHD_FILE: MSMg01no078_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:01 2005
(326 letters)
>mm_chr8_111475662_111476387
Length = 726
Score = 590 bits (305), Expect = e-173
Identities = 317/321 (98%)
Strand = Plus / Plus
Query: 6 gaattccttggacacccctgtgcaggggtggaagcaccacttataagtatgttctgaaat 65
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccttggacaccgatgtgcaggggtggaagcaccacttataagtatgttctgaaat 265
Query: 66 cactttcacagtgtctgttattaagaatcacctgacatgcgaatttccagggaatagcaa 125
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 266 cactttcacagtgtctgttattaagaatcacctgacgtgcgaatttccagggaatagcaa 325
Query: 126 acctcgtggtcacatgatcccacccatgtaattggtacagccggaagacaatggtatttc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acctcgtggtcacatgatcccacccatgtaattggtacagccggaagacaatggtatttc 385
Query: 186 ccagctaagtctgtaatggaccccgaggctgccctcaatgcctgcacttctgcccacctt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccagctaagtctgtaatggaccccgaggctgccctcaatgcctgcacttctgcccacctt 445
Query: 246 tttgagagcaggaagccgctcttgagctgttatatgctctgggggcttccgccacgggtt 305
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 446 tttgagagcaggaagccgctcttgagctgttacatgctctgggggcttccgccacgggtt 505
Query: 306 ctcttcttgtcagcatagtga 326
|||||||||||||||||||||
Sbjct: 506 ctcttcttgtcagcatagtga 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_k04.g1 MSMg01no078_k04.g1 CHROMAT_FILE:
MSMg01no078_k04.g1 PHD_FILE: MSMg01no078_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:01 2005
(391 letters)
>mm_chr8_111606870_111607660
Length = 791
Score = 567 bits (293), Expect = e-166
Identities = 303/307 (98%), Gaps = 3/307 (0%)
Strand = Plus / Minus
Query: 1 taattgcaacatggcctattagatgggacttagggagagaataaagtggggactgcatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 taattgcaacatggcctattagatgggacttagggagagaataaagtggggactgcatta 247
Query: 61 cctttcttcagttaataatgaatcaatataatttcattaagtgaaataagacattagtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cctttcttcagttaataatgaatcaatataatttcattaagtgaaataagacattagtag 187
Query: 121 taggggaaatagcttttactgtgtgtgacctctctatattagctttctaatttttctgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 taggggaaatagcttttactgtgtgtgacctctctatattagctttctaatttttctgca 127
Query: 181 tatccaaatgcctctgaatttaaaactttactgaaaaacatcattttgcttaaaaagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tatccaaatgcctctgaatttaaaactttactgaaaaacatcattttgcttaaaaagctt 67
Query: 241 taaagttatttttttcaaaaa--aattatttatttatttactttatatgtaccagtatac 298
|||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 66 taaagttatttttt-caaaaataaattatttatttatttactttatatgtacgagtatac 8
Query: 299 tatcttc 305
|||||||
Sbjct: 7 tatcttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space: 298724
Effective search space used: 298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
