Query= MSMg01no079_g03.b1 MSMg01no079_g03.b1 CHROMAT_FILE:
MSMg01no079_g03.b1 PHD_FILE: MSMg01no079_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:00 2005
(479 letters)
>mm_chr8_106780859_106781738
Length = 880
Score = 868 bits (449), Expect = 0.0
Identities = 467/473 (98%), Gaps = 1/473 (0%)
Strand = Plus / Minus
Query: 8 acctactggtac-aacaataaagagaatttatgttctgtgggtatcctgaatccctgaga 66
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acctactggtacaaacaataaagagaatttatgttctgtgggtatcctgaatccctgaga 621
Query: 67 gcatcccccaagcttggattgattagcagtgagcagagatcaccttaaagatttaggaga 126
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 gcatcccccaagcttggattgattagcagtgagcagagatcaccttaaatatttaggaga 561
Query: 127 tccaagtagttgactaaggtgtcttcctaaggcaggaaaggtagttaaggtttaaggttg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccaagtagttgactaaggtgtcttcctaaggcaggaaaggtagttaaggtttaaggttg 501
Query: 187 aagttcatcacttacaagcaaaggccaaaagaaagatctcattatcttgtcaagtccaca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagttcatcacttacaagcaaaggccaaaagaaagatctcattatcttgtcaagtccaca 441
Query: 247 catgtataagactaggaaacagaaaacaacggtgacttcaaacccagtgatgacgatata 306
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 cgtgtataagactaggaaacagaaaataacggtgacttcaaacccagtgatgacgatata 381
Query: 307 tggttcaggggcttgtcccacgatgaaaaagatcatagatgtcacagttaccacctagaa 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 380 tggttcaggggcttgtcccacgatgaaaaagatcatagatgtcacagttaccacctagca 321
Query: 367 gaagaaaacaaagacttagtcattgctcatacaatgggtttagttcctatggggaggttg 426
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 320 gaagaaaacaaagacttagtcattgatcatacaatgggtttagttcctatggggaggttg 261
Query: 427 ggtgcatgtgtggtactgggggttggatccagggtctcaggtagtgagtgctg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggtgcatgtgtggtactgggggttggatccagggtctcaggtagtgagtgctg 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space: 408030
Effective search space used: 408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_g03.g1 MSMg01no079_g03.g1 CHROMAT_FILE:
MSMg01no079_g03.g1 PHD_FILE: MSMg01no079_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:00 2005
(606 letters)
>mm_chr8_106627838_106628843
Length = 1006
Score = 1141 bits (590), Expect = 0.0
Identities = 602/606 (99%)
Strand = Plus / Plus
Query: 1 tgggaagactcgcacagctcccataaactcagccttggtctcccgtctctctgcgtgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggaagactcgcacagctcccataaactcagccttggtctcccgtctctctgcgtgtca 260
Query: 61 gaggatggttctgactgcctggcagatgcacaggccaggagggagaaatggggctcaggg 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggatgattctgactgcctggcagatgcacaggccaggagggagaaatggggctcaggg 320
Query: 121 gtggacagatagtggtgagtgatatttacccctggagaagaacagggaaatgggaggatg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 gtggacagatagtggtgagtgatatttacccctggagaagaacaaggaaatgggaggatg 380
Query: 181 agcctacggcaagaccaggaaattaggtcagatgtgaggcagccggtggaatgcacagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctacggcaagaccaggaaattaggtcagatgtgaggcagccggtggaatgcacagac 440
Query: 241 cagagaggaagaggtcaagacacctgcatatctgggagcgctgtctgtgtatattggggt 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagagaggaggaggtcaagacacctgcatatctgggagcgctgtctgtgtatattggggt 500
Query: 301 tcactgtgtatattctagtcctcctgcccagggattcagtgtttgttgcctttattacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcactgtgtatattctagtcctcctgcccagggattcagtgtttgttgcctttattacag 560
Query: 361 atgcagccactgaagcccagagagggcaaagcacagacccaagaccacagagcacatgag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 atgcagccactgaagcccagagagggcaaagcacagacccaagaccacagagcacacgag 620
Query: 421 ccacaggtcaggctcaaacagacaaacatggaccttgttgtgatgccccacaattgctcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacaggtcaggctcaaacagacaaacatggaccttgttgtgatgccccacaattgctcc 680
Query: 481 accaacccaccccaagtcaggatgctcagaggaggctgaaagagtcctctgtctgatgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaacccaccccaagtcaggatgctcagaggaggctgaaagagtcctctgtctgatgct 740
Query: 541 tgggcctcccccagaggagacagagagctagtttaaatgacctagcaaatcagtttcaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgggcctcccccagaggagacagagagctagtttaaatgacctagcaaatcagtttcaaa 800
Query: 601 ttgcaa 606
||||||
Sbjct: 801 ttgcaa 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
