Query= MSMg01no079_l24.b1 MSMg01no079_l24.b1 CHROMAT_FILE:
MSMg01no079_l24.b1 PHD_FILE: MSMg01no079_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:27 2005
(363 letters)
>mm_chr8_11176400_11177162
Length = 763
Score = 584 bits (302), Expect = e-171
Identities = 342/360 (95%), Gaps = 9/360 (2%)
Strand = Plus / Plus
Query: 1 agaccttgatctcacacgctctgagataggcctctgctgatttccccactgccccattcc 60
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccttgagctgacacgctctgagataggcctctgctgatttccccactgccccattcc 260
Query: 61 tgccctttggatgcaccgcagcaaaagaattgtgggtagtagaagctggtgtccgtggag 120
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgccctttgggtgcaccacagcaaaagaattgtgggtagtagaagctggtgtccgtggag 320
Query: 121 ggcatgtcagaacctctctgtgctgttgcaaaggccaccgctccactgtcatgcccactc 180
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 ggcacgtcagaacctctctgtgctgttgcaaaggccaccgcttcactgtcatgcccactc 380
Query: 181 cctggaggagtagacataggcaccgaggtagagtgaagctgagtctgggttgagataaga 240
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 cctggaggagtagacatagg--------tagagtgaagctgagtctgggttgagataaga 432
Query: 241 gtcagccaggcagaggattgagcacactaaacgttctgttaacatcctaaggttgctgtg 300
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 433 gtcagccaggcagaggattgggcacactaaacggcctgttaacatcctaaggttgctgtg 492
Query: 301 gcaacacagcacaagtcgggattccctccagaaatctactctttactgtctggggactgg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 493 gcaacacagcacaagtcgggattccctccagaaatctactctttactgtctggg-actgg 551
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space: 266916
Effective search space used: 266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_l24.g1 MSMg01no079_l24.g1 CHROMAT_FILE:
MSMg01no079_l24.g1 PHD_FILE: MSMg01no079_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:28 2005
(263 letters)
>mm_chr8_11365036_11365701
Length = 666
Score = 472 bits (244), Expect = e-137
Identities = 256/262 (97%), Gaps = 5/262 (1%)
Strand = Plus / Minus
Query: 6 gaattcatctgcctctgtttcctgaaggctgagattaaaggcgtgcaccctcacatctgg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattcatctgcctctgtttcctgaaggctgagattaaaggcgtgcaccctcacatctgg 469
Query: 66 ctatcttggtagaaatatatgagcatatttggtcagggtggtgagaaattaaagcagagt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctatcttggtagaaatatatgagcatatttggtcagggtggtgagaaattaaagcagagt 409
Query: 126 ttctgaagcatggttctggtcttcagggagaggtttgccctactctactctgtctgt--- 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttctgaagcatggttctggtcttcagggagaggtttgccctactctactctgtctgtttg 349
Query: 183 -ctgtccgtctcccccactgctgaggcagcagatgctgaagagaactgaatctgatgatc 241
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tctgtccgtctccct-actgctgaggcagcagatgctgaagagaactgaatctgatgatc 290
Query: 242 agggtctcagaatggagggcag 263
||||||||||||||||||||||
Sbjct: 289 agggtctcagaatggagggcag 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 666
Length adjustment: 9
Effective length of query: 254
Effective length of database: 657
Effective search space: 166878
Effective search space used: 166878
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
