Query= MSMg01no080_a03.b1 MSMg01no080_a03.b1 CHROMAT_FILE:
MSMg01no080_a03.b1 PHD_FILE: MSMg01no080_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:47 2005
(650 letters)
>mm_chr8_14222229_14223278
Length = 1050
Score = 1033 bits (534), Expect = 0.0
Identities = 603/646 (93%), Gaps = 31/646 (4%)
Strand = Plus / Minus
Query: 5 gaattcccccagaacactgaaggaaaggggcagggctgctgcttccacattgaagaaaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaattcccccagaacactgaaggaaaggggcagggctgctgcttccacattgaagaaaca 572
Query: 65 aggaaggataagtcttgtttctagtctttttgcccttctgtggtggcaaggagatttcac 124
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aggaaagataagtcttgtttctagtctttttgcccttctgtggtggcaaggagatttcac 512
Query: 125 cagtttctgtgacagcactgaccgcagcatctcaagtatgacctttgttatctaaactct 184
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 511 cagtttctgtgacagcactgaccatagcatgtcaagtatgacctttgttatctaaactct 452
Query: 185 caagcatattggttagaatggcatttggggacaactccaggttttacagaaaatcacttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caagcatattggttagaatggcatttggggacaactccaggttttacagaaaatcacttt 392
Query: 245 gatgaccaataactcgccattgccggaggtgccactggcataattgattggcataattgg 304
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 391 gatgaccaataactcgccattgccagaggtgccactggcataatcgattggcataattgg 332
Query: 305 atggcacctcctgtctgtttgctgctgctgggcgacagccctattctccaaagatctgta 364
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 331 atggcacctcctgtctgtttgctgctgctgggtgacagccctattctccaaagatctgta 272
Query: 365 caggagtctccatccctttctcttatttgacatgctgaggctatgaatgttttgtcatgt 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 caggagtctccattcctttctcttatttgacatgctgaggctatgaatgttttgtcatgt 212
Query: 425 actaggtgactttgcagggggcgcgaggggcggggggttgaaagcagttccagtgacatg 484
|||| |||||||||||||||||||||||||
Sbjct: 211 acta-------------------------------ggttgaaagcagttccagtgacatg 183
Query: 485 ttcctctgctcaggtgtggggcaagcaagctaccacagagcaccatattcctctgttcca 544
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ttcctctgctcaggtgtggtgcaagcaagctaccacagagcaccatattcctctgttcca 123
Query: 545 atctctgccggccggtcgaatcagaccgaagccattctcctcttctgcttcttggcagag 604
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atctcggccagccggtcgaatcagaccgaagccattctcctcttctgcttcttggcagag 63
Query: 605 ctgtaaagacagcctgtgcatctcctttcgtgtcctcctccacccc 650
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 62 ctgtaaagacaacctgtgcatctcctttcgtgtcctcctccacccc 17
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_a03.g1 MSMg01no080_a03.g1 CHROMAT_FILE:
MSMg01no080_a03.g1 PHD_FILE: MSMg01no080_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:47 2005
(526 letters)
>mm_chr8_14064300_14065225
Length = 926
Score = 880 bits (455), Expect = 0.0
Identities = 509/541 (94%), Gaps = 25/541 (4%)
Strand = Plus / Plus
Query: 1 aaaag-aaagtattttgttaggagaacaagtcggctctgtgactggtcttcacaagtgag 59
||||| |||||||||||| |||||| |||||||||||||||||||||||| |||||||||
Sbjct: 210 aaaagcaaagtattttgtcaggagagcaagtcggctctgtgactggtcttgacaagtgag 269
Query: 60 ccagctacatttacttagactcacagtaagctagtcaaaatgtaaacttgtgagcttctg 119
|||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 270 ccagctacattt----------acagtaagctagtcaaaacgtaaacttgtgagcttctg 319
Query: 120 aaaggtgatataaaatataactagttcatggatatgaaatagaaaatataaacagcgcat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaggtgatataaaatataactagttcatggatatgaaatagaaaatataaacagcgcat 379
Query: 180 ataatatactctttactatcataacatgaatcttccaatatttttgtacctagtttctcc 239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataatataccctttactatcataacatgaatcttccaatatttttgtacctagtttctcc 439
Query: 240 ttaattctgtttccatgtctgtagcatgtacagagaaggtggacacattatcctcacact 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaattctgtttccatgtctgtagcatgtacagagaaggtggacacattatcctcacact 499
Query: 300 tagaaaagatgctcacaaacctatacacatgaccgtttacacacacagacatggacaccc 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 500 tagaaaagatgctcacaaacctatacacatgaccatttacacacacagacatggacaccc 559
Query: 360 tttcagaccaacatgtgcgcacaggcactgtaagtcacaggaacatgcagatacacagac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttcagaccaacatgtgcgcacaggcactgtaagtcacaggaacatgcagatacacagac 619
Query: 420 ataaaaatacacatgttataaatatatat-----atata---------atatcctaactt 465
||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 620 ataaaaatacacatgttataaatatatatttatcatatatatatatatatatcctaactt 679
Query: 466 catgcaacatataattcacaagtattatatgagcatttaacattaagtataatattaaat 525
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 680 catgcaacatataattcacaagtattatatgagcatttaaaattaagtataatattaaat 739
Query: 526 a 526
|
Sbjct: 740 a 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
