BAC Information

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BAC

Clone NameMSMg01-080L11
Chromosome8 (Build37)
Map Location 44,502,920 - 44,503,088
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628212, Triml1, LOC622082, EG622117, LOC100039417, Zfp42
Downstream geneAdam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080L11.T7 (MSMg01no080_l11.b1)MSMg01-080L11.TJ (MSMg01no080_l11.g1)
ACCAG301486AG301487
length705725
length of high quality
(start - end)
72 (149 - 220)169 (64 - 232)
definitionCHROMAT_FILE: MSMg01no080_l11.b1 PHD_FILE: MSMg01no080_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:42 2005CHROMAT_FILE: MSMg01no080_l11.g1 PHD_FILE: MSMg01no080_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATAGAGGATCCGCGGAAT
TCATTATTTCCCTAAAATTACCACATTTTATCCATTATTATAATAAATTG
GTTCTGGCAAGAAACATTTATACATCTTTTCAGAGTGTCCGGTTGCTAAG
GGCAGAATAATGACACAAATTTCTTTAATTTTTTATTTTTTTCGTGTTTA
AGCATTTGCCTTCATGTAATTCTGTTTTCTGTTTAGTGTTCCTAGTGTCC
ACACTGNCAGGGACAGGGCATCAGATTCTTCATGNTCTTGTATTATAAGC
AGCTGTCAGCTGATGTGTGGGTTCTGGGGATTGAACTTGGCTCCTCTGGA
ATAAATAGCCACTTCTCTTACCCTGTTCATCTTTCTCTTCATACATGACA
GAATTTCCCCTCCACATCTTTAATTCATTCTCTGTTGCTCATGACCTTTT
TGCCGCTTGCACGACTCTTTCTCACGGACCCCCTTCACTCAACTATACCC
CCCCATATTGACCTCCCCCCTTTTTAATTCAATGTTCCCCCCAGTTATCC
TGGCACCCTCCGTTTCCAACTCTAAGTTTGTTCCCCATTCTCCTCCCACC
GTTTTCCCTCACTTCATTCCCCTTCTCTTTCCTGACTTTAATTTTTCTTT
ACATATCCTCTTTCCTTCTTTTCCACCCTTTTTTTCCCTTTTGTCCAATT
TATTA
TGCATGGGGAGGCCTGGAGGCCGCCTTTCAAAAAATTGAGGTGACCTATA
GATTTCCCCGTGGAATTCCTGCGGTGAGATGGAAGGCAGAGACAACAGAA
TACCCACAGATCTGAGGTTGGGTGTCATGGAGAACACGGCTGCAAACAAC
AAAGGACCCTGAATCAAACAAGGTAGAAGAAAAGGACCCATTCTTCAGGT
TGGCTTTGAGGGGAGGGATATTTGTTTTGTGTTCCCGATACTGCATTTCT
CCGTAATCCCCTCGCTGTCCTGATGTCCATTCCACACACCAGGCTGGTCC
CACATTTTTTTTTTATCTACCTATTTCTGTTTCCTGAGTTGTTGAGACAA
TCTTCATTCCCCATCTCAACGTTGTTTTTCGTCTCGCTTTTCCTCCCGCT
GTTTGCCCCCCCCTTATTTCATCCATTTTTTTTCCCTTTTCTTACCTCCT
TCTTTCATTTTCCCTTCTCTTTCCCTCCCCTCTTTTGTATTCCTCCCTTA
CCGTTAATGTTTGTCCCTTTCCTTTCTTTATTACCCCTCCCCTCCTTCCA
CGTCCTCACTCTATCTTTCCCCCTTTACTTTTATGTTATTTTTCTTCTCC
CCGTTTTTTTTTTTTCCATATTACCCATTTCCCTTTTCCCCCCTTTTTTT
TTCCTCCCCGCTTCCTTCTCTCGCTCTCTCTCCTCTTATTATTCTCTTTT
CTCTTGGTCTTCACTTCCTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_l11.g1 MSMg01no080_l11.g1 CHROMAT_FILE:
MSMg01no080_l11.g1 PHD_FILE: MSMg01no080_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:43 2005
         (169 letters)



>mm_chr8_44502720_44503288
          Length = 569

 Score =  319 bits (165), Expect = 5e-92
 Identities = 168/169 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcctgcggtgagatggaaggcagagacaacagaatacccacagatctgaggttgggt 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aattcctacggtgagatggaaggcagagacaacagaatacccacagatctgaggttgggt 310

                                                                       
Query: 61  gtcatggagaacacggctgcaaacaacaaaggaccctgaatcaaacaaggtagaagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtcatggagaacacggctgcaaacaacaaaggaccctgaatcaaacaaggtagaagaaaa 250

                                                            
Query: 121 ggacccattcttcaggttggctttgaggggagggatatttgttttgtgt 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggacccattcttcaggttggctttgaggggagggatatttgttttgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)