BAC Information

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BAC

Clone NameMSMg01-082G12
Chromosome8 (Build37)
Map Location 7,799,106 - 7,799,716
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream geneLOC100039836, Efnb2, 9430010O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082G12.T7 (MSMg01no082_g12.b1)MSMg01-082G12.TJ (MSMg01no082_g12.g1)
ACCAG302783AG302784
length683685
length of high quality
(start - end)
633 (49 - 681)611 (75 - 685)
definitionCHROMAT_FILE: MSMg01no082_g12.b1 PHD_FILE: MSMg01no082_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:52 2005CHROMAT_FILE: MSMg01no082_g12.g1 PHD_FILE: MSMg01no082_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTCCGCTCTGAGCCCCATTTTTAATGGGGTTATTTGAT
TTTCTGGAGTCCACCTTCTTGAGATCTTTATATATATTGGATATTAGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCACTCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTATCTTTTGCCTTGCAGAAGCTTTACAACTTT
ATGAGGTCCCATTATTGATTCTCGATCTTACAGCACAAGCTATTGCTGTT
CTATTCAGGAATTTTTTCCCTGTACCCATATCTTTGAGGCTTTTCTCTAC
TTTCTCCTCTATAAGTTTCAGTATCTCTGGTTTTATGTGGAGTTCCTTAA
TCCACTTAGATTTGACCTAAGTACAAGGAGATAGGAATTGATCAATTCTC
ATTCTTCTACACGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT
GACCATAGGTGTGTGGTTCATCTCTGGGTTTTCAATTCTGTTCCATTGGT
CTATGTGTCTGTAGCTATACCAGTACCATGCAGTTTTTTATCACAATTGC
TCTGTAGTACAGCTTTAGGTCAGGCATGGTGAN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAGGTTTATATAATGCGAGCTGGA
TGCTTGTCCAAGTACACTCATTTAGAGAAAGAAATGTGAAAAATCTTCAA
CTGCAAAGAGTGTGGCATTCAAAGATTATGCAGTAAACACAGAGAACAAT
CATTTCCAATGAAAAGGTTTAACTGCCAAAAAATTGTAGAAAATTACTGT
CTCCAGTGACCTGATTCAATGCGTAGATTTCATTTGTGTTTTAGTCTTTG
TCTTTCTTACATTGTTCCATATGTCAGGAAGCTGGAGACAGGAAGCGAGT
GTGGGGACAGGAAGGCTCGTGCATCCCCTGCAGGCCTGTGGGTTGACAGG
GGATCAGGCCTTTGGCTCTGCAGAGCTCTCCTTGTTATTTTCTTCCCTGC
CCTGCTGGCTCAACTTGTACTATGAAGCTGCACCCCAAGCAGGCAGGAGG
CAAAGGACACAGTGTCTGCAGAATGTGTTCTGTTTTGTATAACTCCTTTT
TATTCTAATTTAATTTTACATTATGGAAAAGTTATAAAAGTAGGCACTAC
TTCCCATAAGCTCTGCTCTTCATTTGGGTTCATTTAATGTGAGCATCTCC
TTTAACCCAAGTATATTCACTGATATCAGAAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_g12.g1 MSMg01no082_g12.g1 CHROMAT_FILE:
MSMg01no082_g12.g1 PHD_FILE: MSMg01no082_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:52 2005
         (611 letters)



>mm_chr8_7798906_7799916
          Length = 1011

 Score = 1151 bits (595), Expect = 0.0
 Identities = 607/611 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgaggtttatataatgcgagctggatgcttgtccaagtacactcatttagagaaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ttgaggtttatataatgcgagctggatgcttgtccaagtacactcatttagagaaagaaa 752

                                                                       
Query: 61  tgtgaaaaatcttcaactgcaaagagtgtggcattcaaagattatgcagtaaacacagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tgtgaaaaatcttcaactgcaaagagtgtggcattcaaagattatgcagtaaacacagag 692

                                                                       
Query: 121 aacaatcatttccaatgaaaaggtttaactgccaaaaaattgtagaaaattactgtctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aacaatcatttccaatgaaaaggtttaactgccaaaaaattgtagaaaattactgtctcc 632

                                                                       
Query: 181 agtgacctgattcaatgcgtagatttcatttgtgttttagtctttgtctttcttacattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agtgacctgattcaatgcgtagatttcatttgtgttttagtctttgtctttcttacattg 572

                                                                       
Query: 241 ttccatatgtcaggaagctggagacaggaagcgagtgtggggacaggaaggctcgtgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttccatatgtcaggaagctggagacaggaagcgagtgtggggacaggaaggctcgtgcat 512

                                                                       
Query: 301 cccctgcaggcctgtgggttgacaggggatcaggcctttggctctgcagagctctccttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cccctgcaggcctgtgggttgacaggggatcaggcctttggctctgcagagctctccttg 452

                                                                       
Query: 361 ttattttcttccctgccctgctggctcaacttgtactatgaagctgcaccccaagcaggc 420
           ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct: 451 ttattttcttccctgccctgctggctccacttgtactatgaaactgcaccccaagcaggc 392

                                                                       
Query: 421 aggaggcaaaggacacagtgtctgcagaatgtgttctgttttgtataactcctttttatt 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 391 aggaggcaaaggacacagtgtctgcagaatgtgctctgttttgtataactcctttttatt 332

                                                                       
Query: 481 ctaatttaattttacattatggaaaagttataaaagtaggcactacttcccataagctct 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctaatttaattttacactatggaaaagttataaaagtaggcactacttcccataagctct 272

                                                                       
Query: 541 gctcttcatttgggttcatttaatgtgagcatctcctttaacccaagtatattcactgat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gctcttcatttgggttcatttaatgtgagcatctcctttaacccaagtatattcactgat 212

                      
Query: 601 atcagaaaaat 611
           |||||||||||
Sbjct: 211 atcagaaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)