BAC Information

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BAC

Clone NameMSMg01-082M18
Chromosome8 (Build37)
Map Location 3,201,525 - 3,202,174
singlet/doubletsinglet
Overlap geneInsr
Upstream geneEG664801, EG209786, D630014A15Rik
Downstream geneA430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082M18.T7 (MSMg01no082_m18.b1)MSMg01-082M18.TJ (MSMg01no082_m18.g1)
ACCAG303080AG303081
length711712
length of high quality
(start - end)
653 (39 - 691)376 (66 - 441)
definitionCHROMAT_FILE: MSMg01no082_m18.b1 PHD_FILE: MSMg01no082_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:21 2005CHROMAT_FILE: MSMg01no082_m18.g1 PHD_FILE: MSMg01no082_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GGACTCGGCAAGATGAGCATCTCAACAAAGAGCAGGTATGTTCTCTGCTA
AGTGAACAAAATGTCTTGTTGGTGGAAGTGGGAATGGAAGAGAAGGGACC
ATGAACATGAGACCTTATGTTGAACCTTCTACAAGGTTGATTATTTCATT
ACAATCTCAATGACCATGGAGAGGTTAGAATGTTGCAGGTCCAAAGTCTA
ATTACACTTAATCCTGGTCTGACTTTAGCCCTCTTAATAGCCACTCTTAC
CCACCTCTTCATCTGACCTAACCTCCTTGTGACTAGCATGTAAACCTTTT
GGAATGTACTAGTGTAGCAGACCATCAGCTTCCATCAACCAAAACACTAA
GATGACCTCTGAGGCCTATAGCAGAGATTTCCCTGGTTTTCTATTACTCG
CCTCTTTGATGTTCATACCAATGTATTTTAAAGGTGACCTGTTTATGACT
TTGTGTTCTATTAGTATAAAAATATCCTGAGACTGTTACCACATTGGAAT
ATGTAATTTGGGATAACGTTTATTAATGTTCCTGGGTCAAGCTGTTCATA
ATTGGTTCCAGGATAAACTATCTCTTATCCCTTTAAGGTGATAGTTTTGA
ATTGACAGAACCAATTGGAAAGTTTCCAAACATGGCTGTGGTCAGGAAAT
TATCACAGTGT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAAGACAGCAGGGCTGTTACATAGAAAACACCCCC
CCCTCCCCGTCTCAAAAAAAAAAAAAGAAAGAGAAACAAAGGAAGGAAGG
AAGAAAGAAAGAAACAGAAAGGAAAGAAGGAAGGAAGGAAGGAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAGAGAGAGAAAGGGCTGGTGAGATGGCTCAGTGGGTA
AGAGCACCCGACTGCTCTTCCTAAGGTCCAGAGTTCAAATCCCAGCAACC
ACATGGTGGCTCACAACCATCCGCAACGAGATCTGACTCCCTCTTCTGGA
GTGTCTGACTTACATATAATAATAAATAAATCTTTAAAAACAAAAAAAAA
AAGAGAATGAGAGAGAATGAAAGAAAACAAGGACAAACAAGAATGAAATG
ATAAAGACCACCAGGGAGGGAGGCCACAGGGTAAAGGTGACTGCCATGAG
GTCTAACTTGAGCGCCTGGGACCACAGGTAGAAGGGGAGAAGGAGCTGCT
TCAAATTGTCCTCTGACCTCCAGAGACACACAGTAGCATTCAACACCCAC
CTTCCTGCTTAAAGGAAATACACTGTACCAAAGATTGGAACAACTCCCAG
AAACTGCTGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_m18.b1 MSMg01no082_m18.b1 CHROMAT_FILE:
MSMg01no082_m18.b1 PHD_FILE: MSMg01no082_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:21 2005
         (653 letters)



>mm_chr8_3201322_3202374
          Length = 1053

 Score = 1234 bits (638), Expect = 0.0
 Identities = 647/650 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggactcggcaagatgagcatctcaacaaagagcaggtatgttctctgctaa 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggactcggaaagatgagcatctcaacaaagagcaggtatgttctctgctaa 263

                                                                       
Query: 64  gtgaacaaaatgtcttgttggtggaagtgggaatggaagagaagggaccatgaacatgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgaacaaaatgtcttgttggtggaagtgggaatggaagagaagggaccatgaacatgag 323

                                                                       
Query: 124 accttatgttgaaccttctacaaggttgattatttcattacaatctcaatgaccatggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 accttatgttgaaccttctacaaggttgattatttcattacaatctcaatgaccatggag 383

                                                                       
Query: 184 aggttagaatgttgcaggtccaaagtctaattacacttaatcctggtctgactttagccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggttagaatgttgcaggtccaaagtctaattacacttaatcctggtctgactttagccc 443

                                                                       
Query: 244 tcttaatagccactcttacccacctcttcatctgacctaacctccttgtgactagcatgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcttaatagccactcttacccacctcttcatctgacctaacctccttgtgactagcatgt 503

                                                                       
Query: 304 aaaccttttggaatgtactagtgtagcagaccatcagcttccatcaaccaaaacactaag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaccttttggaatgtactagtgtagcagaccatcagcttccatcaaccaaaacactaag 563

                                                                       
Query: 364 atgacctctgaggcctatagcagagatttccctggttttctattactcgcctctttgatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgacctctgaggcctatagcagagatttccctggttttctattactcgcctctttgatg 623

                                                                       
Query: 424 ttcataccaatgtattttaaaggtgacctgtttatgactttgtgttctattagtataaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcataccaatgtattttaaaggtgacctgtttatgactttgtgttctattagtataaaa 683

                                                                       
Query: 484 atatcctgagactgttaccacattggaatatgtaatttgggataacgtttattaatgttc 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 684 atatcctgagactgttaccacattggaatatgtaatttgggataacgtttatcaatgttc 743

                                                                       
Query: 544 ctgggtcaagctgttcataattggttccaggataaactatctcttatccctttaaggtga 603
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgggtcaagctgctcataattggttccaggataaactatctcttatccctttaaggtga 803

                                                             
Query: 604 tagttttgaattgacagaaccaattggaaagtttccaaacatggctgtgg 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tagttttgaattgacagaaccaattggaaagtttccaaacatggctgtgg 853


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)