BAC Information

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BAC

Clone NameMSMg01-082M20
Chromosome8 (Build37)
Map Location 32,774,756 - 32,884,221
singlet/doubletdoublet
Overlap geneEG330731
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329
Downstream geneLOC100041340, Nrg1, 2010007E15Rik, EG666589, EG546052
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082M20.T7 (MSMg01no082_m20.b1)MSMg01-082M20.TJ (MSMg01no082_m20.g1)
ACCAG303084AG303085
length702697
length of high quality
(start - end)		661 (42 - 702)611 (70 - 680)
definitionCHROMAT_FILE: MSMg01no082_m20.b1 PHD_FILE: MSMg01no082_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:22 2005CHROMAT_FILE: MSMg01no082_m20.g1 PHD_FILE: MSMg01no082_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,774,756 - 32,775,412)(32,883,611 - 32,884,221)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGAATATAATCTGGATGATAAGACAACTTGGTTCTAATACCAAGTTTCC
TAATTTTTAGTCAGAAAACATAATATAGAAAGAGAAAGATACAATGGGTC
CATAAATTGGAGATCCTGTTGGGATTCTATGACTGGTTTCATGAATGTCC
TGAAGAAATCGACAAGGCCAATTATGCTTGAAAGTTCTTTTGTTTTCAGT
TACAAGCTATGTTTTGACATCATCAACAGCAGTTCTGGAAAAATAAGAGG
AAATATGTGATTGGTAGAAGGCAGGGGCAAATCATTAGCTGAGGCAGGCA
GAGAAAGCATGCTACCTGTAAAGACAGAACATAAGACATAAACTGTTTCT
GAGCTATTAAAACATAACCAGAGAGTGGCTGGAGAGATGGCTCAGTGGTT
AGGAGCACTTCTTGCTCTTGCAAAAAGCCTGGGTTCATAAGTGCATGCAG
AAAAAACATTCATATTAAACAGAGGAAAGTAAAGCTAACATTTTTTAAAA
CGTGCTAGAGCCTGGAGCTGGGGCAGTTCATAGAATGTTCATCTAACATA
TGAGAATCCCTGAGTTTGATCCCCAGGGCCATATAAAAACCTAAAATTGA
TACGGTTATGTGCCTATAGTCTTAGAACTTGGGAGGTACAGATAGGAGGG
TC

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCTGCTCTACTTCATAACCAGGTGACTATG
GAGAACTGTGATGTGCTATGCAGGCCAAAAAGAAGCGAGGATTGCAAAGC
TTTCACTGTAAGGAACTAATAAGTGCTTGAAGAGATAAGCATCTTTAGTC
TGATTTAAATCCTATATTATGTATTGAATATTATATGGTTCTCCATTTAT
AATACAATTTTTATGTTTTAATGTAGCAGCTAAAATAAAATGTAAAAGTA
GATTTAATAATACATGTCAACCAAAACTAAAATTAAATTTAAAAAGCAGC
ACCCCGGTAATTCTATTATAAAGATGAGAGAATTTAGTGCCTTTGGTGCA
AATACAAATGAGAAATTTATTCTGTCCACAAGAACTCTGCAGAACATTGT
AGTATTCTCTTTTGTCTGATTTCTGCAGGGGCATTGGGCAATGACCAGGA
GGGTTGCCAGAGATGAGCTGCCTGCTCAGAGGTAGCATGAGCGTACAGGG
ACTGGAAGGTGACAGGGAAAGGAGACAGTAGGGAAGACAGAAGAGGCCCA
GGTGGCCTGATGCATCACATTCGGGAAGTGTCAAAGGAACAGAGAATGAT
TTCCCTCCCGTAGACTGAGCCTGACCAGGCTTGTTAAGTGGCCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_m20.b1 MSMg01no082_m20.b1 CHROMAT_FILE:
MSMg01no082_m20.b1 PHD_FILE: MSMg01no082_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:22 2005
         (661 letters)



>mm_chr8_32774552_32775612
          Length = 1061

 Score = 1270 bits (657), Expect = 0.0
 Identities = 657/657 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaatataatctggatgataagacaacttggttctaataccaagtttcctaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaatataatctggatgataagacaacttggttctaataccaagtttcctaatt 264

                                                                       
Query: 65  tttagtcagaaaacataatatagaaagagaaagatacaatgggtccataaattggagatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttagtcagaaaacataatatagaaagagaaagatacaatgggtccataaattggagatc 324

                                                                       
Query: 125 ctgttgggattctatgactggtttcatgaatgtcctgaagaaatcgacaaggccaattat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgttgggattctatgactggtttcatgaatgtcctgaagaaatcgacaaggccaattat 384

                                                                       
Query: 185 gcttgaaagttcttttgttttcagttacaagctatgttttgacatcatcaacagcagttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttgaaagttcttttgttttcagttacaagctatgttttgacatcatcaacagcagttc 444

                                                                       
Query: 245 tggaaaaataagaggaaatatgtgattggtagaaggcaggggcaaatcattagctgaggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggaaaaataagaggaaatatgtgattggtagaaggcaggggcaaatcattagctgaggc 504

                                                                       
Query: 305 aggcagagaaagcatgctacctgtaaagacagaacataagacataaactgtttctgagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggcagagaaagcatgctacctgtaaagacagaacataagacataaactgtttctgagct 564

                                                                       
Query: 365 attaaaacataaccagagagtggctggagagatggctcagtggttaggagcacttcttgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attaaaacataaccagagagtggctggagagatggctcagtggttaggagcacttcttgc 624

                                                                       
Query: 425 tcttgcaaaaagcctgggttcataagtgcatgcagaaaaaacattcatattaaacagagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttgcaaaaagcctgggttcataagtgcatgcagaaaaaacattcatattaaacagagg 684

                                                                       
Query: 485 aaagtaaagctaacattttttaaaacgtgctagagcctggagctggggcagttcatagaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaagtaaagctaacattttttaaaacgtgctagagcctggagctggggcagttcatagaa 744

                                                                       
Query: 545 tgttcatctaacatatgagaatccctgagtttgatccccagggccatataaaaacctaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgttcatctaacatatgagaatccctgagtttgatccccagggccatataaaaacctaaa 804

                                                                    
Query: 605 attgatacggttatgtgcctatagtcttagaacttgggaggtacagataggagggtc 661
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attgatacggttatgtgcctatagtcttagaacttgggaggtacagataggagggtc 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no082_m20.g1 MSMg01no082_m20.g1 CHROMAT_FILE:
MSMg01no082_m20.g1 PHD_FILE: MSMg01no082_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:22 2005
         (611 letters)



>mm_chr8_32883256_32884266
          Length = 1011

 Score = 1181 bits (611), Expect = 0.0
 Identities = 611/611 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgctctacttcataaccaggtgactatggagaactgtgatgtgctatgcaggccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 ttctgctctacttcataaccaggtgactatggagaactgtgatgtgctatgcaggccaaa 907

                                                                       
Query: 61  aagaagcgaggattgcaaagctttcactgtaaggaactaataagtgcttgaagagataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aagaagcgaggattgcaaagctttcactgtaaggaactaataagtgcttgaagagataag 847

                                                                       
Query: 121 catctttagtctgatttaaatcctatattatgtattgaatattatatggttctccattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 catctttagtctgatttaaatcctatattatgtattgaatattatatggttctccattta 787

                                                                       
Query: 181 taatacaatttttatgttttaatgtagcagctaaaataaaatgtaaaagtagatttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 taatacaatttttatgttttaatgtagcagctaaaataaaatgtaaaagtagatttaata 727

                                                                       
Query: 241 atacatgtcaaccaaaactaaaattaaatttaaaaagcagcaccccggtaattctattat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atacatgtcaaccaaaactaaaattaaatttaaaaagcagcaccccggtaattctattat 667

                                                                       
Query: 301 aaagatgagagaatttagtgcctttggtgcaaatacaaatgagaaatttattctgtccac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaagatgagagaatttagtgcctttggtgcaaatacaaatgagaaatttattctgtccac 607

                                                                       
Query: 361 aagaactctgcagaacattgtagtattctcttttgtctgatttctgcaggggcattgggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aagaactctgcagaacattgtagtattctcttttgtctgatttctgcaggggcattgggc 547

                                                                       
Query: 421 aatgaccaggagggttgccagagatgagctgcctgctcagaggtagcatgagcgtacagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aatgaccaggagggttgccagagatgagctgcctgctcagaggtagcatgagcgtacagg 487

                                                                       
Query: 481 gactggaaggtgacagggaaaggagacagtagggaagacagaagaggcccaggtggcctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gactggaaggtgacagggaaaggagacagtagggaagacagaagaggcccaggtggcctg 427

                                                                       
Query: 541 atgcatcacattcgggaagtgtcaaaggaacagagaatgatttccctcccgtagactgag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atgcatcacattcgggaagtgtcaaaggaacagagaatgatttccctcccgtagactgag 367

                      
Query: 601 cctgaccaggc 611
           |||||||||||
Sbjct: 366 cctgaccaggc 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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