Query= MSMg01no082_p18.b1 MSMg01no082_p18.b1 CHROMAT_FILE:
MSMg01no082_p18.b1 PHD_FILE: MSMg01no082_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:35 2005
(505 letters)
>mm_chr8_24283038_24283942
Length = 905
Score = 899 bits (465), Expect = 0.0
Identities = 480/485 (98%)
Strand = Plus / Minus
Query: 21 attacccacctacccacgtgccactgttccgtgatggcacttttccaagtgatggagata 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 attacccacctacccacgtgccactgttccgtgatggcacttttccaagtgatggagata 646
Query: 81 tttcatcttcaggtctgggatctgaggatgttgtaggagggcagcctggctcccgagact 140
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 ttccatcttcaggtctgggatctgaggatgttgtaggagggcagcctggctcccgagact 586
Query: 141 atgaactgatgccactctgacacttgaggaccctgtggtatcaccctaacttcctgccag 200
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 585 atgaactgatgccactctgatacttgaggaccctgtggtgtcaccctaacttcctgccag 526
Query: 201 ctccccagcctcacatttcctcctgcctgctccgttcccagtggaaaacactttttcaaa 260
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ctccccagcctcacagttcctcctgcctgctccgttcccagtggaaaacactttttcaaa 466
Query: 261 taaaaacacctctgactcttaagaacagcctcttgggaactattttgcaaatgcttaaaa 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 taaaaacacctctgactcttaagaacagcctcttgggaactattttgcaaatgcttaaaa 406
Query: 321 ataaaaggtgggctgctgcttgtgtagaatgtccgtagtgtttcaatgctgtcccttgaa 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ataaaaggtgggctgctgcttgtgtagaatgtccgtagtgtttcaatgctgtcccttgaa 346
Query: 381 attgtctagggtcaggtgtcccttaacacacgcttgtggtttattgctttgactcacggt 440
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 345 attgtctagggtcaggtgtcccttaacacatgcttgtggtttattgctttgactcacggt 286
Query: 441 ctgggtagagttttcaatctggttttgacctggctcccctcccactcacctgggctgcag 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctgggtagagttttcaatctggttttgacctggctcccctcccactcacctgggctgcag 226
Query: 501 cagag 505
|||||
Sbjct: 225 cagag 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_p18.g1 MSMg01no082_p18.g1 CHROMAT_FILE:
MSMg01no082_p18.g1 PHD_FILE: MSMg01no082_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:35 2005
(542 letters)
>mm_chr8_24137630_24138571
Length = 942
Score = 980 bits (507), Expect = 0.0
Identities = 537/549 (97%), Gaps = 8/549 (1%)
Strand = Plus / Plus
Query: 1 aaaatgcccagattaaaccctagcactgcaaaaatcagaaacaaaaccaggaagcactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aaaatgcccagattaaaccctagcactgcaaaaatcagaaacaaaaccaggaagcactct 254
Query: 61 gccaacacagagttcttt----aaaaaaaga-a-aaaaaaacagtaaggagatagtagcc 114
|||||||||||||||||| ||||||||| | |||||||||||||||||| |||||||
Sbjct: 255 gccaacacagagttctttaaaaaaaaaaagagagaaaaaaacagtaaggagagagtagcc 314
Query: 115 tcttaaatcacaagatttcctagtaaatttatgcagagaatcaaagaaaatctgagcatc 174
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcttaaatcacaagatttcatagtaaatttatgcagagaatcaaagaaaatctgagcatc 374
Query: 175 acaagagtgctgtactccagaaaactgagactgtcacgtcgtaggagatttggacagtag 234
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 375 acaagagtgctgtactccagaaaactgtgactgtcacatcgtaggagatttggacagtag 434
Query: 235 aaagcaagcctgctgctggggactgggactcaggaggcagagcttctggggacagaccca 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaagcaagcctgctgctggggactgggactcaggaggcagagcttctggggacagaccca 494
Query: 295 acttcactctctgcttgtgttccctggatctgccagcagctgccccactccacccccacc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acttcactctctgcttgtgttccctggatctgccagcagctgccccactccacccccacc 554
Query: 355 cccaggcaccctcagtttcacatctgtgaaatgggggcagtaacatcccttctctgtgct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cccaggcaccctcagtttcacatctgtgaaatgggggcagtaacatcccttctctgtgct 614
Query: 415 gcaaggaccaagtggcacctctaag-tcccaggagcacaggcgcggtgccaagtgctgcg 473
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 615 gcaaggaccaagtggcacctcta-gctcccaggagcacaggcgcggtgccaagtgctgcg 673
Query: 474 gggaccctagcttttggttttgttccaacagcctgagcctcaagaagaaacattaaatcg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gggaccctagcttttggttttgttccaacagcctgagcctcaagaagaaacattaaatcg 733
Query: 534 ttttttcta 542
|||||||||
Sbjct: 734 ttttttcta 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
