BAC Information

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BAC

Clone NameMSMg01-083C18
Chromosome8 (Build37)
Map Location 8,845,541 - 8,845,822
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039836, Efnb2, 9430010O03Rik
Downstream geneTmem28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083C18.T7 (MSMg01no083_c18.b1)MSMg01-083C18.TJ (MSMg01no083_c18.g1)
ACCAG303367AG303368
length713738
length of high quality
(start - end)
156 (59 - 214)282 (68 - 349)
definitionCHROMAT_FILE: MSMg01no083_c18.b1 PHD_FILE: MSMg01no083_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:49 2005CHROMAT_FILE: MSMg01no083_c18.g1 PHD_FILE: MSMg01no083_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
AGATCTCGCCTGCCTCTGCCTCCCAAATGCTGGGATTAAAGGCGTACACC
ATCACCATCGTAGCCTCGTTCTTTCTTTTTGTGTGTGTGTGTGGTGCTGG
GGATGTAACCCAAGGTCTTTTTTTTTTTTTTTTTTTTTTTCTGAGACAGG
GTTTCTCTGTGTAGCTGTCCTGGAACTCACTTTGCAGATCAGGCTGGCTT
CAAACTCAGAAATCCGCCTGCCTCTGCCTTCTAAGTGCTGGGATTAAAGG
CATGCTCCATCTTTGTCCGGAATATACCAAGGCCTTGAGCAAGTGCCCTG
GTTCTTACCACCTTCTTATGAGAGTGGAGTGTAGTTTCTTTTTATTTTCC
AGAGTTCCCTTCATCTTCATGACTTCCGCAGACTTTCCATCCTGTGTTTC
ACGATAGACAGTATTTTGTTGTTTTCACCACCTTCCCACTTCCATTACCT
TATCTGCTTTTTTCCTCACTTCAACAATATTCCTGTCCTTGCTGAGAATC
TCCCCTCGCGAGAGCCCCTCTTCCCTGTTTCGCCTTTTTTCTTGTCCCTC
CTGCCATTTCTACCTCTTTTTCCCCTCTCTCTATGTCTTTTTTTCAATTC
ACCCTTTGTACTTTTACCCCATCCTCCCTTCTCGTTTTGTCCGCCTTGTT
ACCCCTCTATCCC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTATGGCATACAGTGGGACATCCACTAGGGAC
ATTGAGACATTCACTGGGGACATCTGGAGATGCTGCCAGGATTATATATA
TGGCAGATCTGCCAACCCTTTATCACCTTGAAAGACCATAAAGTCCAGGT
GGGAGCTACAAAGTCAACTCTTGAAAAAAACTTTAAAATGTTCTTAGATT
TCTGGGTCCTAAATGTACTCTTTATTATTTTTCCACAGGAGTAAATGTTT
TGAAGTGTTTGAATTTTTTAATTATTTGATCTTATGTATATGAGTTTCTG
TTTTTCTCCCCCATCATCACGAATTACAACCAATAATTTCACAACCGTTT
TTTACCCCACAGTGTTGTATAATATATTTGTTTATTTTTTTGCTTCCTTT
TTCTCTTTTCTTTTTGTTTATTTTTTGTTTCTACATTTATTAACTAACCT
TTTATTTTCTTTTGTCTTTTTTATTAATCTAAACTTATAAAAATAATTGA
TTTATTCTTATAACCTGCTCCTTTCTTCCATAACTATGCACATTAACTAT
TTTTCTACTTTTTTATTTTTATATCACCCCCATATTTTATATTCTCCCTA
TTTTTGTTTATTATTTTCTAAATTATGAGTTCTCATCGTTATTATGATGT
TAAATAATTATATTAGAGATAATCTAAGATTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_c18.g1 MSMg01no083_c18.g1 CHROMAT_FILE:
MSMg01no083_c18.g1 PHD_FILE: MSMg01no083_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:50 2005
         (282 letters)



>mm_chr8_8845341_8846022
          Length = 682

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtatggcatacagtgggacatccactagggacattgagacattcactggggacatctgg 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgtatggcacacagtgggacatccactagggacattgagacattcactggggacatctgg 423

                                                                       
Query: 61  agatgctgccaggattatatatatggcagatctgccaaccctttatcaccttgaaagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 agatgctgccaggattatatatatggcagatctgccaaccctttatcaccttgaaagacc 363

                                                                       
Query: 121 ataaagtccaggtgggagctacaaagtcaactcttgaaaaaaactttaaaatgttcttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ataaagtccaggtgggagctacaaagtcaactcttgaaaaaaactttaaaatgttcttag 303

                                                                       
Query: 181 atttctgggtcctaaatgtactctttattatttttccacaggagtaaatgttttgaagtg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 302 atttctgggtcctaaatgtactcttcattatttttccacaggagtaaatgttttgaagtg 243

                                                     
Query: 241 tttgaattttttaattatttgatcttatgtatatgagtttct 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttgaattttttaattatttgatcttatgtatatgagtttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)