BAC Information

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BAC

Clone NameMSMg01-083J06
Chromosome8 (Build37)
Map Location 15,501,790 - 15,501,959
singlet/doubletsinglet
Overlap genenone
Upstream geneDlgap2, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097
Downstream geneEG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083J06.T7 (MSMg01no083_j06.b1)MSMg01-083J06.TJ (MSMg01no083_j06.g1)
ACCAG303659AG303660
length743765
length of high quality
(start - end)
170 (65 - 234)164 (68 - 231)
definitionCHROMAT_FILE: MSMg01no083_j06.b1 PHD_FILE: MSMg01no083_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:20 2005CHROMAT_FILE: MSMg01no083_j06.g1 PHD_FILE: MSMg01no083_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATCCGCGGAATTCA
CAGGGACAATTCTGATGTAATATGACAACTAGAAACAAGAGTCCCATACA
GTATTCTGTGAGATAGTTGGACTCAATGAAAGGCACTGTGCCTTGTATCA
GAAGGAATCCATTCATGTGCATCCTGAGCTACCGTCCCACTGGCATCCTA
GAGCACACTGTGTGAGATAAAGACCTTGTCTGTTGTGAAGTTGTTGCTTA
CCCATCAGTTCCTTGGTTTACTCATCATCCTTTTGGTCTCACAGCAGCGT
TTCCTTGTACTCTCTGATTCTGCCTAGTGTGCTGGGTCCATCTTTGAACC
TGCTCTGTTATTCTCCTCTTTCTTTGTTCTCAACCTATGGTTGCTGTTAT
CCTTGGTCAGCTTTTCTTCATAACTTCCCTTCTTACTTCCTGTATCCATG
TCTTCATGACCCTGATCATTTTTAATAATTCCTATTATACAGCTTGATTT
TATATCATTGTGTTTTATACCTTCGTCCAGTGATTCCTCTGTTGCTTTTA
CTATTTCATTCTTCATGTCTTGTTTTCTATATCTTCTCCTTTTATTAATA
CCTTGTTCTTTTCAAATGTTCATTTTCAACCCCTCTTTATGTACCCCCCT
TAATTATTTCCTTTCCTTATTCCCCTTTTTCCATAATCCTCTATTAATAT
CCGTACCATTTCCTCCCTCCTTGTTACATTTTATCACTATTTC
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTAAGCAATGTGCTTGTGGTGGTTTGAATATGCC
TGACCTATGGCTGTTAGGAATTATGGTTGTGCTGGAAGAAGAGATCACTG
TGAGCGTGGGCTTTGAGGTGTCCTAGACTCATGCTTTGCCCAGTGAAGAC
AAGAGCCTCCCTCTGGCTCTCTTTAGATCAAGATGTAGAACTCTCAGCTT
CTCCAGCATCATGCTCTTCTCTCTCACTGCCATGTCTTGCCATGTTGATA
ATGTTCCTTACCTTTGATTTTGTAATTCTGATTCTATTCATTTGTTTGCC
TTTATAATAATTAACGTGTTGACGCTGACTCTTCACACAGTCGCATCCCT
ATACTCACACTGTGCTCTTTTTGTTTTTTTTGTTATATATTTGTTATGTT
ATTATTTTATTGGTTTTTATTTTATTTTCACACCTCCCCCCCAACTCCAC
CCTACTTTTCTAACATTCCTATTCTTAACCTATTCATTCACACTTATTTC
TATGTTATCTTTGCATTCACTATTAAATACACTGACATCATTTTTTTTTT
TAATCACTACTTTTTTATCATTCTATATCAATATTTTTCATAATATATCT
ATATTTATTTTTTAAATTATTTTATTTTTTTTAACTTATTTATATATACT
AATCTATTTTATTATTATTAATTTTTATTATATTCCCCATATTATTTCTT
CCTTCTATACCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_j06.b1 MSMg01no083_j06.b1 CHROMAT_FILE:
MSMg01no083_j06.b1 PHD_FILE: MSMg01no083_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:20 2005
         (170 letters)



>mm_chr8_15501590_15502159
          Length = 570

 Score =  313 bits (162), Expect = 3e-90
 Identities = 168/170 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtaatatgacaactagaaacaagagtcccatacagtattctgtgagatagttggactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 atgtaatatgacaactagaaacaagagtcccatacagtattctgtgagatagttggactc 311

                                                                       
Query: 61  aatgaaaggcactgtgccttgtatcagaaggaatccattcatgtgcatcctgagctaccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 310 aatgaaaggcactgtgccttgtatcagaaggaatccattcatgtgcatcctgagctacca 251

                                                             
Query: 121 tcccactggcatcctagagcacactgtgtgagataaagaccttgtctgtt 170
           |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tcccactgacatcctagagcacactgtgtgagataaagaccttgtctgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)