BAC Information

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BAC

Clone NameMSMg01-083K01
Chromosome8 (Build37)
Map Location 92,529,388 - 92,705,712
singlet/doubletdoublet
Overlap genenone
Upstream geneSall1, LOC100041089, EG625801, EG384862
Downstream geneTox3, LOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083K01.T7 (MSMg01no083_k01.b1)MSMg01-083K01.TJ (MSMg01no083_k01.g1)
ACCAG303694AG303695
length697689
length of high quality
(start - end)
339 (39 - 377)324 (75 - 398)
definitionCHROMAT_FILE: MSMg01no083_k01.b1 PHD_FILE: MSMg01no083_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:24 2005CHROMAT_FILE: MSMg01no083_k01.g1 PHD_FILE: MSMg01no083_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,705,381 - 92,705,712)(92,529,388 - 92,529,711)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGATTCC
TTGAGCACCATGGCTCTGCTTTCCCTCTACCCATGTCCCACAGGGTACTT
ATTAGTTTCTGGTTTCCAAAGAATTTGAACATGTCAGGCTATGGTGTAAA
CCACCCTTTCCCCTTTAAAATAGTTGAGGATGCTTAACAGTCTTCTACCT
CGTTAAATCACTTTTCTTTCTTGCAGCCTGAGATCCCACAGAAGCATATC
CATCCAGACCTGCCATCCTTAGCGCCATCCCTCTTTGCTTGATTTAATTA
TTGAAACATCTGCTATAAAGCCCTTGCATTTACAAATGAGACTATTTACA
ATTTATGAGAGTAGGCTTCGCACATAGTCTCCAAAGATAGATTCTCTTTA
TTTTTAAAGAATAATCACCACTACGTATGTCTAAGAATAATTCTTCTTAA
TTGACAGGGTGAAGGAGGGAGGAATGTATTCATGTTGCCTCGACACCATA
TCTTTATCAACATCCTATCCAATCATTTTCCTTTCTTCCCTACTCCTCTC
ACTTAATACTATCTTTTACCCCCCCCTCCTCCTCTCTTCTACCTTCTCAT
ATCCCCTCATCATCTTCCATGCCTTCTTTATATCCATGTCGTCACACCTC
AATTCTCCCCCCTGTTTTTCCTTTTTCTATTACTCTCTCTTTCTCTG
GAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCATTGTCTTTAGCTTCCCAACAGA
AAACAGGAAGGCAAGAAAGGCATCCTTATACATTCTTCATTAAACGACAT
TCTCTCCCCGACAACCCCGTTGGATCCATACTCTTCCCCCAGCCATGTCT
ACGATGGTTCCCTAGACCTCCCTGAATTCCTAGAGTACTCTGCTTATCTC
ATTTGTTTGCGGGAAGAGCAGTCCAGTCACCACGGTGGTCATCTAGGCCC
CCACCAACCTTCTTTCTGGTCATCATTATGACAGTCTGACTTAACAAGCT
CTTTGCATCCTTGATTTCTGCTTCCTTCCTCAAGATGGTTGCTCCACAGA
CAAGGAACTAGATTGCCCTTGATGACCACCATGTACCCTGTTCCTAGAAT
ATTTGTTCAGTGCCTATAATCAGCTGTAGGAAAAATACATAGATGGAATG
TGTATCCCCCGAGGTCTTTCCTTGTCGTGCTTGATATCTCAGCCCAATGA
CTCCTCTTCTATGTGTCCATACAATCTAACCTTATTGATAACGTGACTTG
CTTTCTGATACTGCATCACTTGCGTTCATTCCTTCCTTGGTTATCTTTTC
CTTTTTTTTTTTTTTCATTTTCAATGTTATTCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_k01.b1 MSMg01no083_k01.b1 CHROMAT_FILE:
MSMg01no083_k01.b1 PHD_FILE: MSMg01no083_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:24 2005
         (339 letters)



>mm_chr8_92705174_92705912
          Length = 739

 Score =  642 bits (332), Expect = 0.0
 Identities = 332/332 (100%)
 Strand = Plus / Minus

                                                                       
Query: 8   attccttgagcaccatggctctgctttccctctacccatgtcccacagggtacttattag 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 attccttgagcaccatggctctgctttccctctacccatgtcccacagggtacttattag 480

                                                                       
Query: 68  tttctggtttccaaagaatttgaacatgtcaggctatggtgtaaaccaccctttcccctt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tttctggtttccaaagaatttgaacatgtcaggctatggtgtaaaccaccctttcccctt 420

                                                                       
Query: 128 taaaatagttgaggatgcttaacagtcttctacctcgttaaatcacttttctttcttgca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 taaaatagttgaggatgcttaacagtcttctacctcgttaaatcacttttctttcttgca 360

                                                                       
Query: 188 gcctgagatcccacagaagcatatccatccagacctgccatccttagcgccatccctctt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gcctgagatcccacagaagcatatccatccagacctgccatccttagcgccatccctctt 300

                                                                       
Query: 248 tgcttgatttaattattgaaacatctgctataaagcccttgcatttacaaatgagactat 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgcttgatttaattattgaaacatctgctataaagcccttgcatttacaaatgagactat 240

                                           
Query: 308 ttacaatttatgagagtaggcttcgcacatag 339
           ||||||||||||||||||||||||||||||||
Sbjct: 239 ttacaatttatgagagtaggcttcgcacatag 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no083_k01.g1 MSMg01no083_k01.g1 CHROMAT_FILE:
MSMg01no083_k01.g1 PHD_FILE: MSMg01no083_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:24 2005
         (324 letters)



>mm_chr8_92529188_92529911
          Length = 724

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccattgtctttagcttcccaacagaaaacaggaaggcaagaaaggcatccttatacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cccattgtctttagcttcccaacagaaaacaggaaggcaagaaaggcatccttatacatt 260

                                                                       
Query: 61  cttcattaaacgacattctctccccgacaaccccgttggatccatactcttcccccagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcattaaacgacattctctccccgacaaccccgttggatccatactcttcccccagcc 320

                                                                       
Query: 121 atgtctacgatggttccctagacctccctgaattcctagagtactctgcttatctcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtctacgatggttccctagacctccctgaattcctagagtactctgcttatctcattt 380

                                                                       
Query: 181 gtttgcgggaagagcagtccagtcaccacggtggtcatctaggcccccaccaaccttctt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgcgggaagagcagtccagccaccacggtggtcatctaggcccccaccaaccttctt 440

                                                                       
Query: 241 tctggtcatcattatgacagtctgacttaacaagctctttgcatccttgatttctgcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggtcatcattatgacagtctgacttaacaagctctttgcatccttgatttctgcttc 500

                                   
Query: 301 cttcctcaagatggttgctccaca 324
           ||||||||||||||||||||||||
Sbjct: 501 cttcctcaagatggttgctccaca 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)