BAC Information

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BAC

Clone NameMSMg01-083L22
Chromosome8 (Build37)
Map Location 113,894,928 - 113,895,166
singlet/doubletsinglet
Overlap geneFa2h
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl
Downstream geneWdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083L22.T7 (MSMg01no083_l22.b1)MSMg01-083L22.TJ (MSMg01no083_l22.g1)
ACCAG303781AG303782
length721755
length of high quality
(start - end)
469 (40 - 508)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no083_l22.b1 PHD_FILE: MSMg01no083_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:34 2005CHROMAT_FILE: MSMg01no083_l22.g1 PHD_FILE: MSMg01no083_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAGAATTTGCGGCGCTAAACGACTCCTATATTCAGAGGATCCGCGGAAT
TCTCAACTGAGGGCCATTGAATGGCTGAGAAGCACCTGAAAAATGTTCAA
CATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCCTGAAATCCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAACAGATG
CTGGCGAGGATGTGGAAAAAGAGGAACACTCCTCCACTGCTGGTGGGATT
GCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGAGGTTCCTCAGAAAA
TTGGACATAGTACTATCAGAAGATCCAGCAATACCTCTCTTGGGCATATA
CCCAGAAGAAGTTCCAACTGGTAATAAGAACACCTGCTCCACTATGTTCA
TAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCC
TCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTA
CTACTCAGCAATTAAAAACAATGGATTTATGAAATTCTTGGACTAATGGA
TGTATCTGGAGGATATCATCCTTAGTGAGGTAACCCAATCACAAAAGAAG
TCATTTATATATGCACTCACTGCATAGTGGATATTAACCCAGAAACATTA
GAATACCTCAGATACTATTTGCTTAACACAAGATAATCTAGAAGAGGTAG
ACCATTGTCTGGGTACATCTT
CAATGATGTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACCATCTCTCTGCCTTAGCGTCCTGGTT
GCCGAAATCACAGGTGTTAGCACAATACCTGACAAGCAAGCACATTCTCG
TAGGATCCATGTGAGGGGCACCAGACAGTCCTGTGTGTCTGGGTTCCTCC
CAAATTCTTTACTGTGGGAAAATACAAAGGTGCTCAGGGCTGCAAGCTTA
TCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCC
TCTCCTCTCCTCACCACACCTCTTTTTTTCTTTCAATTCTTCCATCTAAT
TTTTTTATTTCTTACTCTTCTTCTCTATTATTATATTATTTATTTATTTA
ATTTAACATATTATTTCTCAAATTATATTATTTTAGTAATAATTTTAATT
TATTTTCTCCTTATATTATATTCTTTTGATTTAGAGCAGAACAAACTGCA
AACCTAAATCACTTAATTATTTATACTATATTCTACCTAATTTATAATAC
ATCTCTCTTTTTTATTTCTATATACTTCCATTTCTTTTAATTAATATATT
CTTTATATTCTTTTATTATTTTATATATATAATTATTCAATCTCACCTTT
TTATATTATTTCATATAATATTTATCATTCTTTCTCACATATTTTACTCT
TCATAATTCTCTTATTCTCTAGAACATCTTATTTATCACATTATCCATAC
TTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_l22.g1 MSMg01no083_l22.g1 CHROMAT_FILE:
MSMg01no083_l22.g1 PHD_FILE: MSMg01no083_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:34 2005
         (239 letters)



>mm_chr8_113894728_113895366
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accatctctctgccttagcgtcctggttgccgaaatcacaggtgttagcacaatacctga 60
           ||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||
Sbjct: 201 accatctctctgccttagcctcctggttgccgaaatcacaggcattagcacaatacctga 260

                                                                       
Query: 61  caagcaagcacattctcgtaggatccatgtgaggggcaccagacagtcctgtgtgtctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagcaagcacattctcgtaggatccatgtgaggggcaccagacagtcctgtgtgtctgg 320

                                                                       
Query: 121 gttcctcccaaattctttactgtgggaaaatacaaaggtgctcagggctgcaagcttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttcctcccaaattctttactgtgggaaaatacaaaggtgctcagggctgcaagcttatc 380

                                                                      
Query: 181 tcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcctctcct 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)