BAC Information

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BAC

Clone NameMSMg01-083N16
Chromosome8 (Build37)
Map Location 34,317,106 - 34,317,465
singlet/doubletsinglet
Overlap genenone
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream geneWrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083N16.T7 (MSMg01no083_n16.b1)MSMg01-083N16.TJ (MSMg01no083_n16.g1)
ACCAG303864AG303865
length723717
length of high quality
(start - end)
135 (70 - 204)360 (75 - 434)
definitionCHROMAT_FILE: MSMg01no083_n16.b1 PHD_FILE: MSMg01no083_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:42 2005CHROMAT_FILE: MSMg01no083_n16.g1 PHD_FILE: MSMg01no083_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCATTGTTTCCTGACTGCTCGCTGGACTGATCTGTTAGAATTC
CATTGGTTATTGATTGCTCGCTGGACTGAGCTGTTAGAATTCCATTGGTT
ATTGACTGCTCGCTGGACTGAGCTGTTAGAATTCCATTGGTTATTGACTG
CTAGCTGGACTGAGCTGTTACAATTCCATTGGTTATTGACTGCTATCTGT
ACTGATCTGCTACAATTCCCTTGCTTATTGACTGCTCGCTGGACTGAGCT
GGCTTCTTGCCCCCCAGCTTTTGCTTCCCACGTCTGTGCCGTTATCTTTG
CTCCCTCTCCCCTATCCCATCCTTTGCGTGTATCCTATGATCTTCCTTTC
TTCTTTCTGTCATTCTTTTGTCCCTTCCTATAAAATTCCCTAATAACCTA
TTATTTCTGTATATTTCTTCACAGAATCATCTTCTACTACTACTCCCAAC
TTATCTATTTCTCCTTGAACTTTACTTTCTCTTATTTTATTCTCCCTTAT
TATTTCATCAATTTTATCTCTCCCTTTCATTTTTTTTCTCTTTCCATTAC
TATTCTTTTTCTCCTTCTTCTCTTCTTCTTCTCAATTTTTATATCTATAT
TTCCCATCCACCTTCTTCTTCTCTACCTTCACCCTATTTTTCTTCATTTA
TTATATTTCTTCTTCTTTTTCTN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTGGGATTCTCACAGGAAATTAGC
CCTTTCTCCACTAAGTTGCTTCTGTAAAAATATTTTGTCACAACCAGTAA
CTAACCCAGGGCAATCAAAAAAAAAAATACAGAGAAGGTGGGGGTATAAA
TACAATTTAAATACATTGTATGAAATTCTCAAAGAATGGAAACATTTTTC
TTAAGAGAAGAAATACTCAAAGAGCTAGAGAAATGGGTCAATGTAAGAGC
TAGCAGGTGATGTTCTTGCAAAAAGTCTGGGTTCGGTTACCAGCACTCAC
ATGTGAGCTCACAACTGTCTGCAATTCCAGTTTTAGGGGATCCAATTCTT
TCTTCTAACCTCTGTGAGCACTAGAAATGTACATGGTGCACATGCATACA
TGCATACCAAAAACTTACACACATAAACCATAAATAAAATCTTTTTAGAA
TACACTAATATGTTATCTACAAGTTCGGCAGCATATAGCAGGTAAAACGA
TTTAAATCCCGTAATATAATGCTAACAGGTAATGGCCTTACCTTATGTTT
TCATTGTTTTCCCTCTTTAACTATTTTACTTCTGCTATTATGAATTATTT
ATCCATATTGTCTATTTTTTGATTCAGAGTTCTCCCTAATTACTAATGCT
TCTGCCACAATTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_n16.g1 MSMg01no083_n16.g1 CHROMAT_FILE:
MSMg01no083_n16.g1 PHD_FILE: MSMg01no083_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:42 2005
         (360 letters)



>mm_chr8_34316906_34317665
          Length = 760

 Score =  688 bits (356), Expect = 0.0
 Identities = 359/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgggattctcacaggaaattagccctttctccactaagttgcttctgtaaaaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgggattctcacaggaaattagccctttctccactaagttgcttctgtaaaaatatt 260

                                                                       
Query: 61  ttgtcacaaccagtaactaacccagggcaatcaaaaaaaaaaatacagagaaggtggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcacaaccagtaactaacccagggcaatcaaaaaaaaaaatacagagaaggtggggg 320

                                                                       
Query: 121 tataaatacaatttaaatacattgtatgaaattctcaaagaatggaaacatttttcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataaatacaatttaaatacattgtatgaaattctcaaagaatggaaacatttttcttaa 380

                                                                       
Query: 181 gagaagaaatactcaaagagctagagaaatgggtcaatgtaagagctagcaggtgatgtt 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaagaaatacacaaagagctagagaaatgggtcaatgtaagagctagcaggtgatgtt 440

                                                                       
Query: 241 cttgcaaaaagtctgggttcggttaccagcactcacatgtgagctcacaactgtctgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgcaaaaagtctgggttcggttaccagcactcacatgtgagctcacaactgtctgcaa 500

                                                                       
Query: 301 ttccagttttaggggatccaattctttcttctaacctctgtgagcactagaaatgtacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccagttttaggggatccaattctttcttctaacctctgtgagcactagaaatgtacat 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)