BAC Information

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BAC

Clone NameMSMg01-084I12
Chromosome8 (Build37)
Map Location 119,611,398 - 119,611,666
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2
Downstream geneBcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084I12.T7 (MSMg01no084_i12.b1)MSMg01-084I12.TJ (MSMg01no084_i12.g1)
ACCAG304356AG304357
length703805
length of high quality
(start - end)
272 (43 - 314)---
definitionCHROMAT_FILE: MSMg01no084_i12.b1 PHD_FILE: MSMg01no084_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:35 2005CHROMAT_FILE: MSMg01no084_i12.g1 PHD_FILE: MSMg01no084_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGAAT
TCACCTCCGACCACACTGTCTTGGGTCCTATTTCTGGTATACTCTGATTG
GGAGTGACCGGTTCACACAGGCATACTCCCATAACTGTGACAGCAGGACC
ACCTGGTTTGAACACCCCTGTGATTCTCACTGTGAACTCAATGATCCATT
TAAACTAATTAATTCCCTGCCCCCCCAACTCCCCCATAGCTTGTGTCTCC
AATCTCACCAATCCCCTGGCAGACTGGTCCTAGAATACATGCCCCCCAGA
TGGGCAATGCTTGGCGCATCTTCCTGTGTTCTTCAAGTCAACATTTGGAA
GCCTCTGAGGAGAAACTGGCACTAACATAGCCTTTGGAATGGTGAGTGGA
ATTCTCTTGATTTACCCAAAATGATATAGGATCTATTTTATGTGTGTGAG
TGCTTTCCTTGCATTCTTGTCTATGTGCCACATGTGAGTCACATGACATA
GGAGAGCATCATATTTCCTCACTCTGGAGTTACAGGCAGCGATGATGTAT
CCTTAATTGATGACCCCCCTCTCCAGCCCTTCATTGTGCGCCTGTGTGCG
TTTTCCCCTCTTTGTTCGCCCATATGTTTTATTTCTCTCCTACCTTTTTT
TTTCTTTTTTTTTTCCCCCCACCTTTTTTTTTCCCTCTTTTTTTTCCTCC
CCT
TGCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCGCAACCCCAGGACAGCCAGGGTTACACAGAGAAACC
CTGTCTTGACCGCACGCACCGACAGAGAGAGAGAGAGACAGAGAGAGACA
GAGAGAGAGAGAGAGAAAGACAGAGGCCCGACAGCGAACGAACGACGGCA
GGAAGTACCTCCCTCCCCCCCCTCCCCCCTCCCCCCCCTTTTCCCCCCCT
CCCCCTTCTCTTCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCAT
CCCCCCCATTCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCTTTCCCCCCT
CTCCCCCCCCCCCCCTTCCCCCCTTTTCCCCCCCCCCTCCCCTTCCCCTC
CCCCCCCCCCTCCCCCCCTTCCTTCTTCTCCCCCCCCCCCCCCCCCCTTC
TCCTTGCCCCCCCCCCCCCTCCCTTCCTCCTCTCCCTCTCCCCCCCTCCC
CCCCCCCTTTTTCCCCCCCCCCCCCTTCTCCCCCCCTCTCTCCCCCCCTC
TTCCTCCCCCCTTCCCCCCCCCCCTTCCCCTTCCCCCCCCTCTTCCCCTC
TTCCCCCCCACCCCCTCCCGCCCCCCCCCTATCCTGCCCCCCCCCCCCCC
CCTTTTTTCTCCCTCCCCCCCCCCCTTTCCGCTCCCTCCCTCTCCCTCCC
CCCCCCTCCCCTCCTCCCCCCCTCTCTCCCTTCCCCCTCCCTTCTTCTCC
CCCCCCCCCCCCCTCTCTTCCTTTCTTCCCCCCCTCTCTCTCCCTCCCCA
CCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_i12.b1 MSMg01no084_i12.b1 CHROMAT_FILE:
MSMg01no084_i12.b1 PHD_FILE: MSMg01no084_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:35 2005
         (272 letters)



>mm_chr8_119611194_119611866
          Length = 673

 Score =  474 bits (245), Expect = e-138
 Identities = 263/269 (97%), Gaps = 1/269 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctccgaccaca-ctgtcttgggtcctatttctggtatactctgattgggagt 63
           ||||||||||||||  | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctccgaggaaatctgtcttgggtcctatttctggtatactctgattgggagt 264

                                                                       
Query: 64  gaccggttcacacaggcatactcccataactgtgacagcaggaccacctggtttgaacac 123
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 265 gaccggttcacacaggcatactcccagaactgggacagcaggaccacctggtttgaacac 324

                                                                       
Query: 124 ccctgtgattctcactgtgaactcaatgatccatttaaactaattaattccctgcccccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctgtgattctcactgtgaactcaatgatccatttaaactaattaattccctgcccccc 384

                                                                       
Query: 184 caactcccccatagcttgtgtctccaatctcaccaatcccctggcagactggtcctagaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caactcccccatagcttgtgtctccaatctcaccaatcccctggcagactggtcctagaa 444

                                        
Query: 244 tacatgccccccagatgggcaatgcttgg 272
           |||||||||||||||||||||||||||||
Sbjct: 445 tacatgccccccagatgggcaatgcttgg 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space:   174632
Effective search space used:   174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)