Query= MSMg01no084_p24.b1 MSMg01no084_p24.b1 CHROMAT_FILE:
MSMg01no084_p24.b1 PHD_FILE: MSMg01no084_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:11 2005
(618 letters)
>mm_chr8_97127373_97128389
Length = 1017
Score = 1156 bits (598), Expect = 0.0
Identities = 613/618 (99%), Gaps = 1/618 (0%)
Strand = Plus / Plus
Query: 1 agagtaatagcttacaaggcacttttcagttttcattttatgtagagtctgcatttcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtaatagcttacaaggcacttttcagttttcattttatgtagagtctgcatttcttg 260
Query: 61 agacgataacttgctgtgtagacccctgtcattacaagactacagtattaaaatagttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacgataacttgctgtgtagacccctgtcattacaagactacagtattaaaatagttac 320
Query: 121 ctctgtcagtatgtgacacttcaataactttaggttagtggcacttgttagagctgcatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ctctgtcagtatgtgacacttcaataactttaggttagtggcacttgttagagttgcatt 380
Query: 181 gttagagctgatgtcccaaaattttagggatttccttgtgggtttttgttgttgttgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttagagctgatgtcccaaaattttagggatttccttgtgggtttttgttgttgttgttt 440
Query: 241 tgaactagggtttttgttattgtctttttaaagtaggcaagtaggcttatttgtttgttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaactagggtttttgttattgtctttttaaagtaggcaagtaggcttatttgtttgttt 500
Query: 301 gtttttaagttgacctgaatttcctgtattttaatcttatgtttcctgattgcttgttgg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 gtttttaagttgacctgaatttcctgtattttaatcttatgtttcctgattgtttgttgg 560
Query: 361 tcttttgttttactttctgtggtggttttgtgagcttcttgatttcccaggatgcatggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttttgttttactttctgtggtggttttgtgagcttcttgatttcccaggatgcatggt 620
Query: 421 gcccagggcttctgtttaatatctttgcaagttctgcgttttgctgtttgtataagccct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcccagggcttctgtttaatatctttgcaagttctgcgttttgctgtttgtataagccct 680
Query: 481 ttattttttctagatacaatatttttaagctattgattatagaaagtattccatcatggt 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttattttttctagatacagtatttttaagctattgattatagaaagtattccatcatggt 740
Query: 541 ctatgtagactttttatgctttgtcagcaaaataacttcttttagtacatattaagggga 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 741 ctatgtagactttttatgctttgtcagcaaaataacttcttttagtaaatattaagggga 800
Query: 601 acttgataccttataaat 618
||||||||| ||||||||
Sbjct: 801 acttgatac-ttataaat 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1017
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1007
Effective search space: 612256
Effective search space used: 612256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_p24.g1 MSMg01no084_p24.g1 CHROMAT_FILE:
MSMg01no084_p24.g1 PHD_FILE: MSMg01no084_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:11 2005
(484 letters)
>mm_chr8_97228271_97229152
Length = 882
Score = 814 bits (421), Expect = 0.0
Identities = 469/487 (96%), Gaps = 7/487 (1%)
Strand = Plus / Minus
Query: 1 actatgtagactagaactcacacagagatcaacctgcttctgcctcctgagtggtgagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 591 actatgtagactagaactcacacagagatcaacctgcttctgcctcctgagtgatgagat 532
Query: 61 taaaagcatgtatggctcttagtcgtta-ttttttgtttcttaatttttatttaccatcg 119
|||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 531 taaaagcacgtatggctcttagtcgttatttttttgttt----gtttttatttaccatcg 476
Query: 120 ttatcattgtgggcacggtatgccatccttatttatacctttggaaataacatgaggaac 179
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttattattgtgggcacggtatgccatccttatttatacctttggaaataacatgaggaac 416
Query: 180 agcttcttttgggctgaggttttctgtttccgtgagcaagtctgaggtttgagaaggggg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agcttcttttgggctgaggttttctgtttccgtgagcaagtctgaggtttgagaaggggg 356
Query: 240 cgagaaggaacagaaaaaggcaaggggcggagaggagcgatgagtcacgaaaaaactgaa 299
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 355 cgagaaggaacagaaaaaggcaaggggcggagaggagcgatgagtcacgaaataactgaa 296
Query: 300 agagagacg-cgcggtgatgggggg-atctgacgtgcctactattgtgtgtcaggcactg 357
|| |||||| ||||| ||| ||||| ||||||| ||| ||||||||||||||||||||||
Sbjct: 295 agcgagacggcgcggggatagggggcatctgacctgcatactattgtgtgtcaggcactg 236
Query: 358 tgtgggcactgaagacacggccaaaacccggatcagaccgtgtcgccgcgggattcatct 417
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 235 tgtgggcactgaagacacggccaaaacccggatcagaccgtgtcgctgcgggattcatct 176
Query: 418 aagctagagtctgaaacaaaccagtaaccctgcaaatgggtcgctgaggttttgatcacc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aagctagagtctgaaacaaaccagtaaccctgcaaatgggtcgctgaggttttgatcacc 116
Query: 478 tttaggc 484
|||||||
Sbjct: 115 tttaggc 109
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 882
Length adjustment: 10
Effective length of query: 474
Effective length of database: 872
Effective search space: 413328
Effective search space used: 413328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
